Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3a02
         (540 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56568| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.34 
SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.60 
SB_58390| Best HMM Match : DUF1167 (HMM E-Value=0)                     30   1.1  
SB_37866| Best HMM Match : CDC37 (HMM E-Value=0.81)                    30   1.1  
SB_47070| Best HMM Match : V-set (HMM E-Value=0.085)                   29   1.8  
SB_25075| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_29594| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.4e-06)        28   4.2  
SB_41920| Best HMM Match : Filamin (HMM E-Value=0.00015)               28   4.2  
SB_46788| Best HMM Match : LRR_1 (HMM E-Value=9.1e-12)                 28   5.6  
SB_44844| Best HMM Match : DUF164 (HMM E-Value=0.094)                  27   7.4  
SB_32454| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  
SB_19362| Best HMM Match : M (HMM E-Value=0.0014)                      27   7.4  
SB_5496| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.8  
SB_17447| Best HMM Match : zf-B_box (HMM E-Value=0.04)                 27   9.8  
SB_7993| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.8  

>SB_56568| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 397

 Score = 31.9 bits (69), Expect = 0.34
 Identities = 27/100 (27%), Positives = 50/100 (50%)
 Frame = +3

Query: 96  FEKLQKDGKNSVDNIIKWMKDSKIIDEVKASEEKARKLFEGVPDINNIDXXKLKEVINKM 275
           +  L+K+ +N V  + K  K   +  +  +  E+ + L + V D+  I   K  + +NK+
Sbjct: 194 YNSLRKEKENLVSELTK--KFEMLEGQKSSLVEENKVLQDSVKDLK-IRLKKSNQDLNKI 250

Query: 276 AAEQKKNVEELTTMLEKQPPKVLDALQAGASAFKAALEKK 395
             E K  +EE+  M++K+  K L+      S  K+ LEK+
Sbjct: 251 TEELKSTLEEI-EMVKKKGNKDLEEKVGVLSKEKSNLEKE 289


>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6863

 Score = 31.1 bits (67), Expect = 0.60
 Identities = 22/95 (23%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
 Frame = +3

Query: 99   EKLQKDGKNSVDNIIKWMKDSKIIDEVKASEEKARKLFEGVPDINNIDXXKLKEVINKMA 278
            ++++KD +N +  II+WM +   I E +        L   V   +N+D  + K +     
Sbjct: 5063 QQIEKDLENEISEIIEWMNEVARITEKETLTRHDDTLLSSVE--SNLDGLEDKSLRVSQL 5120

Query: 279  AEQKKNVEE--LTTMLEKQPPKVLDALQAGASAFK 377
             E+ + + E     +++++  ++LD L+    AFK
Sbjct: 5121 VEKMEELPENKQKQVIKEKLSQLLDQLKKQKVAFK 5155


>SB_58390| Best HMM Match : DUF1167 (HMM E-Value=0)
          Length = 734

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
 Frame = +3

Query: 141 IKWMKDSKIIDEVKASEEKARKL-FEGVPDINNIDXXKLKEVINKMAAEQKKNVEELTT- 314
           +KW+  + +I  +K  +EK RKL  E     +N+     +    K   ++++ V  + T 
Sbjct: 331 VKWITLTAVISALKGLQEKIRKLELERTDAEDNLKRLAAESKHYKEVLQKEQTVRSVNTG 390

Query: 315 MLEKQPPKVLDALQAGASAFKAALEKK*PY 404
           ++ KQ   + D L A A A    LEK+  Y
Sbjct: 391 VISKQNEALQDDLHA-AEARCNLLEKQLDY 419


>SB_37866| Best HMM Match : CDC37 (HMM E-Value=0.81)
          Length = 461

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 20/73 (27%), Positives = 37/73 (50%)
 Frame = +3

Query: 108 QKDGKNSVDNIIKWMKDSKIIDEVKASEEKARKLFEGVPDINNIDXXKLKEVINKMAAEQ 287
           QK+ KN ++N +K    SKI+  +K+S    +KL +      N+   K+     K + E 
Sbjct: 316 QKEKKNKINNDVKSKSKSKIVKILKSS----KKLKKDGRKAKNLKDSKVNLEKAKNSTED 371

Query: 288 KKNVEELTTMLEK 326
           K ++ E+  + E+
Sbjct: 372 KGSIAEIAHLKEQ 384


>SB_47070| Best HMM Match : V-set (HMM E-Value=0.085)
          Length = 260

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 12/26 (46%), Positives = 20/26 (76%)
 Frame = +3

Query: 120 KNSVDNIIKWMKDSKIIDEVKASEEK 197
           +N +D+I  W+KD+K+IDE  + E+K
Sbjct: 36  RNPIDHIA-WIKDNKLIDETFSPEKK 60


>SB_25075| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 267

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 12/26 (46%), Positives = 20/26 (76%)
 Frame = +3

Query: 120 KNSVDNIIKWMKDSKIIDEVKASEEK 197
           +N +D+I  W+KD+K+IDE  + E+K
Sbjct: 51  RNPIDHIA-WIKDNKLIDETFSPEKK 75


>SB_29594| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.4e-06)
          Length = 1292

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 20/74 (27%), Positives = 31/74 (41%)
 Frame = +3

Query: 105  LQKDGKNSVDNIIKWMKDSKIIDEVKASEEKARKLFEGVPDINNIDXXKLKEVINKMAAE 284
            +Q DG   +         S+++D     +    +L E    I+ +D   LKE +NK AA 
Sbjct: 792  VQNDGSLKLQQDEMQKASSELLDTKSTMDALRAQLVEKQNKISELDSL-LKETVNKNAAS 850

Query: 285  QKKNVEELTTMLEK 326
             K   E     L+K
Sbjct: 851  LKACEERYNEQLDK 864


>SB_41920| Best HMM Match : Filamin (HMM E-Value=0.00015)
          Length = 600

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -3

Query: 214 SNNFRAFSSEAFTSSIILESFIHLIMLSTLFFPSFCSFSKNW 89
           SN+ R F S  F   +  ++   +   S++ FPS  SF K+W
Sbjct: 179 SNSLRIFFSAVFLFIVYYKTADDISSRSSVTFPSLDSFIKDW 220


>SB_46788| Best HMM Match : LRR_1 (HMM E-Value=9.1e-12)
          Length = 139

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +3

Query: 273 MAAEQKKNVEELTTMLEKQPPKVLDALQAGASAFKAALEKK*PYQHHV-KT*FSSS 437
           + A + K V E+ T LEK    +L   + GA      +  +  Y HHV KT FS S
Sbjct: 73  LEANELKIVPEVVTKLEKLQVLILSDNEIGALPADLGIPGRAFYSHHVWKTSFSWS 128


>SB_44844| Best HMM Match : DUF164 (HMM E-Value=0.094)
          Length = 332

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 20/76 (26%), Positives = 38/76 (50%)
 Frame = +3

Query: 168 IDEVKASEEKARKLFEGVPDINNIDXXKLKEVINKMAAEQKKNVEELTTMLEKQPPKVLD 347
           I+++K   E+  +    +    N +  KLKE I+ +  E+K+  EEL ++  K     L 
Sbjct: 48  IEKLKQEIEQKEREINNLRKTRNDEVKKLKERIHVLEEEKKRLEEELASVKYK-----LT 102

Query: 348 ALQAGASAFKAALEKK 395
           AL++   A   A +++
Sbjct: 103 ALESEVKALSNANDRQ 118


>SB_32454| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1161

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +3

Query: 174 EVKASEEKARKLFEGVPDINNIDXXKLKEVINKMAAEQKKNVEELTTMLEKQ 329
           E+    E+ RKL          +  KL E + K  A Q+K  EEL    EK+
Sbjct: 715 EMNRKNERERKLLREENKKLQSEIDKLSESLEKSVAVQRKMEEELRDSSEKR 766


>SB_19362| Best HMM Match : M (HMM E-Value=0.0014)
          Length = 722

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 21/82 (25%), Positives = 36/82 (43%)
 Frame = +3

Query: 21  KQQHLDSVXXXXXXXXXXXXXMDQFFEKLQKDGKNSVDNIIKWMKDSKIIDEVKASEEKA 200
           K++H+DSV             MDQ  E ++K+   +   + +  ++ + +    A  E  
Sbjct: 379 KEKHIDSVKKDNQG-------MDQAMEAMKKELVATRSEMQRLKREHERLQRENAEREID 431

Query: 201 RKLFEGVPDINNIDXXKLKEVI 266
           R   EGV   NN    +LKE +
Sbjct: 432 RLTTEGVTKANNSKINQLKEQV 453


>SB_5496| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1352

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 170 YYFRIFHPFDNVVDAVLSVFL*FF 99
           YYFR  HP+  ++ + L VFL FF
Sbjct: 54  YYFR--HPWSRIITSYLVVFLNFF 75


>SB_17447| Best HMM Match : zf-B_box (HMM E-Value=0.04)
          Length = 1223

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 4/70 (5%)
 Frame = +3

Query: 222 PDINNIDXXKLKEVINKMAAEQKKNV----EELTTMLEKQPPKVLDALQAGASAFKAALE 389
           PD+ N    +      K A ++KK V    +E T     QP   +D   A    F    E
Sbjct: 140 PDLKNESWDRFLPKFRKKAVKKKKKVPKTKKEYTPFPPPQPESKMDKELASGEYFLKEKE 199

Query: 390 KK*PYQHHVK 419
           +K   QH  K
Sbjct: 200 RKAQAQHERK 209


>SB_7993| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 676

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 18/74 (24%), Positives = 32/74 (43%)
 Frame = +3

Query: 108 QKDGKNSVDNIIKWMKDSKIIDEVKASEEKARKLFEGVPDINNIDXXKLKEVINKMAAEQ 287
           +KDGK  V   +    +S I +E+    +      EGV   +       K V  +  AE+
Sbjct: 457 RKDGKEEVTPPLNEQTESDISNEINKGPDSKGGSLEGVGGKDASVDANEKSVPKQETAEE 516

Query: 288 KKNVEELTTMLEKQ 329
           K N E   + ++++
Sbjct: 517 KDNSETTESNVQEE 530


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,396,013
Number of Sequences: 59808
Number of extensions: 173218
Number of successful extensions: 437
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)