Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30p22
         (774 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyc...    31   0.24 
SPBC15D4.06 |||NatC N-acetyltransferase complex catalytic subuni...    30   0.42 
SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S...    29   0.98 
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|...    26   6.9  
SPAC23H3.08c |bub3||mitotic spindle checkpoint protein Bub3|Schi...    25   9.1  
SPAC12G12.10 |||WD repeat protein, human WDR21 family|Schizosacc...    25   9.1  

>SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 30.7 bits (66), Expect = 0.24
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
 Frame = +1

Query: 175 CQVT-SEDHEAAVDAIKRHFLSEHVLVISRNMNVNNDRALDEYLIGLLKQGNTLFAKDDN 351
           CQVT SE  +  V +I      E+++V ++     N  AL +YL  L K  N LF ++  
Sbjct: 66  CQVTASEPSQLNVQSI------ENMIVTTKAGQTEN--ALSKYLPYLSKNSNILFVQNGM 117

Query: 352 GSIAGVC 372
           G++  VC
Sbjct: 118 GAVENVC 124


>SPBC15D4.06 |||NatC N-acetyltransferase complex catalytic subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 150

 Score = 29.9 bits (64), Expect = 0.42
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +1

Query: 529 IKMLTVIPEYRRQGLAVMLAEKSKELAHDQG 621
           I ML ++ EYR QG+A  L + S ++  ++G
Sbjct: 72  IAMLAIVKEYRGQGIATKLTQASLDVMKNRG 102


>SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog
           Mde5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 28.7 bits (61), Expect = 0.98
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -3

Query: 430 DKMRNVLNSSDLRDCLQNSRRPL-QSSHYHPL 338
           D + N + SSD R+      RP  QSSHYHP+
Sbjct: 139 DTVVNHMGSSDPRNIDYGIYRPFNQSSHYHPM 170


>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
           5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 736

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = -2

Query: 722 RWLHVICEG 696
           RWLH++CEG
Sbjct: 593 RWLHIVCEG 601


>SPAC23H3.08c |bub3||mitotic spindle checkpoint protein
           Bub3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 320

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 500 SHKFGVSCSFAMKYKKSFVFGSW 432
           +H  GVSC   ++ +  F+ GSW
Sbjct: 93  NHGKGVSCISKLRLENCFISGSW 115


>SPAC12G12.10 |||WD repeat protein, human WDR21
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 420

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 304 IGLLKQGNTLFAKDDNGSIAGVCV 375
           IG L++ NT+     NG I G C+
Sbjct: 111 IGWLREVNTIILTSKNGDILGCCL 134


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,369,223
Number of Sequences: 5004
Number of extensions: 73516
Number of successful extensions: 230
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 230
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)