Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30p18
         (762 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr 1...    28   1.3  
SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyc...    27   2.9  
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    27   3.9  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    26   5.1  
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    26   6.7  

>SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 386

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 3/105 (2%)
 Frame = +2

Query: 455 RMFHKGLLNDVIDLRYYGVNPNSVRCMGI-AMKFNNFVKVLNLTDNFLNNDACYHLGEML 631
           + F    L   + +   G+ P  +  + +  + +   +KVL+L DN   +     L   L
Sbjct: 181 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL 240

Query: 632 TTNSCLRELNLCGCRIGVEGLRRLLPGL--IVNRSLKVLNLNKNQ 760
            +   LREL L  C +   G   ++     + N  L+ L L  N+
Sbjct: 241 KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE 285


>SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
 Frame = +2

Query: 215 NVKKALFQEGLYAPGSGEICTKYITVSDSSVLRHPYFNYPGVIDPGIEK----ALLQPEP 382
           N KK L  E    P     C    ++  S +LR  Y NYP ++    EK    A + P  
Sbjct: 170 NPKKILPDEAAETP-----CEMIKSLGKSELLRLRYMNYPELLVNQCEKLVINACINPTT 224

Query: 383 PIIYPDDGQVLYLELCKEMGQCPVR 457
             +   +G++   E  KE+ +C ++
Sbjct: 225 ATLDCVNGELYNDESAKELFRCIIK 249


>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1237

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 224 KALFQEGLYAPGSGEICTKYITVSDS 301
           K +  EGL+  G+G+I T YI ++D+
Sbjct: 811 KVVRGEGLHPDGAGKIRTSYIVLTDN 836


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
 Frame = +2

Query: 275 TKYITVSDSSVLRHPYFNYPGVIDPGIEKALLQPEPPII-----YPDDGQVLYLEL 427
           +KY  ++D+SVLR   F+   V D  +E+     E  I      YPD   VL+ EL
Sbjct: 252 SKYRAINDNSVLRSDDFSSKAVFDKYVERECYYSENAISKIFQNYPDLA-VLFEEL 306


>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 18/69 (26%), Positives = 26/69 (37%)
 Frame = +2

Query: 455 RMFHKGLLNDVIDLRYYGVNPNSVRCMGIAMKFNNFVKVLNLTDNFLNNDACYHLGEMLT 634
           RMFHK L   + +   + + P+SV  + +  K  N    L    N  N+   Y       
Sbjct: 584 RMFHKELYFAIFNNFLFAIQPDSVLPLSMLSKSLNLDDKLPFLSNNENDKYVYEFDPFKI 643

Query: 635 TNSCLRELN 661
            N     LN
Sbjct: 644 ANCRASGLN 652


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,915,695
Number of Sequences: 5004
Number of extensions: 59897
Number of successful extensions: 166
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)