Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte30p18
(762 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_1149 + 30753463-30754695,30754834-30755017,30755321-307565... 40 0.003
02_04_0595 - 24186714-24186898,24187004-24187150,24187647-241877... 39 0.004
04_04_0423 - 25102305-25102489,25102571-25102717,25103079-251031... 35 0.061
06_01_0928 - 7159857-7159922,7159923-7160024,7160126-7160206,716... 33 0.19
05_06_0263 + 26752759-26754393 31 0.76
12_01_0772 - 7016864-7017012,7017114-7017262,7017346-7017489,701... 29 4.0
11_06_0511 - 24434007-24436814 29 5.3
05_04_0091 + 17839118-17839303,17840876-17840923,17841381-178415... 29 5.3
07_01_1033 + 8958317-8959254,8959438-8959673,8960440-8960486,896... 28 9.3
>03_05_1149 +
30753463-30754695,30754834-30755017,30755321-30756549,
30756702-30756816,30757126-30758084
Length = 1239
Score = 39.5 bits (88), Expect = 0.003
Identities = 25/100 (25%), Positives = 50/100 (50%), Gaps = 5/100 (5%)
Frame = +2
Query: 464 HKGLLNDVIDLRYYGVN--PNSVRCMGIAMKFNNFVKVLNLTDNFL---NNDACYHLGEM 628
HK + ++V++L ++G+ V+ + + + VK + N ++ A L EM
Sbjct: 78 HKEMYSNVVNLLFHGIEWQTEGVQLLCSFLGPGSSVKQVEFQKNVFGTKSSAALVPLSEM 137
Query: 629 LTTNSCLRELNLCGCRIGVEGLRRLLPGLIVNRSLKVLNL 748
+ N+ ++ + CRIG G++ L L NRS++ + L
Sbjct: 138 IQRNNTIKAIVFSECRIGASGVKLLASALAYNRSVEEVQL 177
>02_04_0595 -
24186714-24186898,24187004-24187150,24187647-24187718,
24188061-24188204,24188769-24188840,24189233-24189304,
24189805-24189876,24190214-24190285,24190416-24190487,
24190685-24190756,24190957-24191031,24191226-24191372,
24191670-24191877,24192240-24192368,24192454-24192663
Length = 582
Score = 39.1 bits (87), Expect = 0.004
Identities = 24/59 (40%), Positives = 36/59 (61%)
Frame = +2
Query: 563 VKVLNLTDNFLNNDACYHLGEMLTTNSCLRELNLCGCRIGVEGLRRLLPGLIVNRSLKV 739
+KVLNL N + +D HL E++ L LNL C++G EGL L GL++ +SL++
Sbjct: 333 LKVLNLGFNNITDDCLAHLKELIN----LESLNLDSCKVGDEGLLH-LRGLMLLKSLEL 386
>04_04_0423 -
25102305-25102489,25102571-25102717,25103079-25103150,
25103305-25103327,25103792-25103863,25104064-25104112,
25104344-25104415,25104880-25104951,25105281-25105352,
25106569-25106640,25106810-25106881,25106974-25107048,
25107324-25107470,25107598-25107805,25108361-25108489,
25108563-25108769
Length = 557
Score = 35.1 bits (77), Expect = 0.061
Identities = 23/61 (37%), Positives = 34/61 (55%)
Frame = +2
Query: 563 VKVLNLTDNFLNNDACYHLGEMLTTNSCLRELNLCGCRIGVEGLRRLLPGLIVNRSLKVL 742
+KVLNL N++ + HL E++ L LNL C+IG EGL L + +++LK
Sbjct: 332 LKVLNLGFNYITDACLVHLKELIN----LECLNLDSCKIGDEGLAHL---KVFHKTLKAE 384
Query: 743 N 745
N
Sbjct: 385 N 385
>06_01_0928 -
7159857-7159922,7159923-7160024,7160126-7160206,
7160289-7160384,7160462-7160566,7160648-7160722,
7161372-7161431,7161960-7162090,7162175-7162250,
7163390-7163459,7163603-7163664,7163788-7163871,
7163973-7164047,7164448-7164585,7164733-7164791,
7164910-7165123,7167996-7168091,7168701-7169639
Length = 842
Score = 33.5 bits (73), Expect = 0.19
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Frame = +2
Query: 542 AMKFNNFVKVLNLTDNFLNNDACYHLGEMLTTNSCLRELNLCGCRIGVEGLRRLLPGLIV 721
A+ NN ++ L + N+ L + + N LREL+L G G EG+R L+ L
Sbjct: 543 ALLENNVLRSLFVNGNYGGPLGASSLAKGILGNKTLRELHLHGNGFGNEGVRALMSALSA 602
Query: 722 NR-SLKVLNLNKN 757
++ + VL++ N
Sbjct: 603 HKGKITVLDIGNN 615
>05_06_0263 + 26752759-26754393
Length = 544
Score = 31.5 bits (68), Expect = 0.76
Identities = 30/125 (24%), Positives = 55/125 (44%), Gaps = 6/125 (4%)
Frame = +2
Query: 401 DGQVL-YLELCKE-MGQCPVRMFHKGLLN-DVIDLRYY---GVNPNSVRCMGIAMKFNNF 562
+G VL YL + +G+ VR F + L + D ++ Y G++ + + + +
Sbjct: 213 EGAVLRYLNISDNALGEKGVRAFEELLKSQDNLEELYVMNDGISEEAAQALSELIPSTEK 272
Query: 563 VKVLNLTDNFLNNDACYHLGEMLTTNSCLRELNLCGCRIGVEGLRRLLPGLIVNRSLKVL 742
+K+L+ +N ++ + EM+ + L RIG +G L L LK L
Sbjct: 273 LKILHFHNNMTGDEGAMFIAEMVKRSPNLESFRCSATRIGSDGGVALAEALGTCTRLKKL 332
Query: 743 NLNKN 757
+L N
Sbjct: 333 DLRDN 337
>12_01_0772 -
7016864-7017012,7017114-7017262,7017346-7017489,
7017549-7017719,7017907-7018020,7018115-7018215,
7018296-7018416,7018601-7018830,7019203-7019265,
7019528-7019570,7019860-7019953,7020428-7020501,
7020616-7020744,7020940-7021017,7021353-7021639
Length = 648
Score = 29.1 bits (62), Expect = 4.0
Identities = 19/66 (28%), Positives = 34/66 (51%)
Frame = +2
Query: 563 VKVLNLTDNFLNNDACYHLGEMLTTNSCLRELNLCGCRIGVEGLRRLLPGLIVNRSLKVL 742
+ +L++ DN L + L + L S +RELN+ G G + L L + +L +
Sbjct: 490 LNLLSIADNHLGSSVAVALAKFL--GSGVRELNIEDIGFGPLGFQILEEALPADVALSHI 547
Query: 743 NLNKNQ 760
N++KN+
Sbjct: 548 NVSKNR 553
Score = 27.9 bits (59), Expect = 9.3
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Frame = +2
Query: 530 CMGIAMKFN---NFVKVLNLTDNFLNNDACYHLGEMLTTNSCLRELNLCGCRIGVEGLRR 700
C A++ N N + +LNL N LN L ++L LR+L++ I EG+R
Sbjct: 387 CFSSALESNISLNSLTLLNLRGNNLNKGDIEDLCKILVKMPNLRDLDISDNPIMDEGIRL 446
Query: 701 LLPGLIVNRSLK 736
L+ ++R+L+
Sbjct: 447 LI--CFISRTLR 456
>11_06_0511 - 24434007-24436814
Length = 935
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/61 (24%), Positives = 33/61 (54%)
Frame = +2
Query: 416 YLELCKEMGQCPVRMFHKGLLNDVIDLRYYGVNPNSVRCMGIAMKFNNFVKVLNLTDNFL 595
YL + K + + P+ +G+ + +LRY G+ + +RC+ +M ++ L+L + +
Sbjct: 621 YLTVLK-LQESPLEELPRGIGYQLFNLRYLGLRKSQIRCLPSSMANLYNLQTLDLRGSRI 679
Query: 596 N 598
N
Sbjct: 680 N 680
>05_04_0091 +
17839118-17839303,17840876-17840923,17841381-17841526,
17841616-17841664,17842260-17842316,17842460-17842627,
17842950-17843011,17843103-17843190,17843277-17843388,
17843472-17843548,17843622-17843759,17844424-17844588,
17844667-17844780,17845026-17845122,17845242-17845390
Length = 551
Score = 28.7 bits (61), Expect = 5.3
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +2
Query: 488 IDLRYYGVNPNSVRCMGIAMKFNNF-VKVLNLTDNFLNNDACYHLGEMLTTNSCLRELNL 664
I ++ + P + I +++N VK LNL +AC +L E++T N L LNL
Sbjct: 116 ISYQFEIIQPLVFKIYDIDTRYHNTPVKTLNLAQQDFLGEACCNLSEIVTNNHSL-TLNL 174
>07_01_1033 +
8958317-8959254,8959438-8959673,8960440-8960486,
8960683-8960733
Length = 423
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/27 (48%), Positives = 20/27 (74%)
Frame = -2
Query: 185 TIPPSEAPQNFVRRLP*KSFLWAVALV 105
T+ P+E+ Q +VRR P K+ L +VA+V
Sbjct: 297 TVQPTESYQEWVRRKPSKAALRSVAMV 323
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,577,403
Number of Sequences: 37544
Number of extensions: 368748
Number of successful extensions: 823
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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