Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte30p15
(758 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0129 - 31883732-31883854,31883989-31884051,31884213-318842... 94 1e-19
12_01_0513 + 4059586-4059620,4060155-4060365,4060470-4060724,406... 84 1e-16
09_04_0174 + 15346123-15346207,15346350-15346502,15346623-153467... 83 2e-16
01_01_1049 + 8275837-8275859,8276428-8276503,8276545-8276634,827... 46 4e-05
01_06_1745 - 39609894-39610030,39610127-39610223,39613856-396139... 33 0.33
08_01_0265 + 2148255-2150219,2150735-2150812 31 1.00
04_03_0256 - 13564070-13564456,13564543-13565299,13565734-135665... 31 1.00
05_07_0284 - 28943527-28943625,28944417-28944785 30 1.7
07_03_0809 - 21669632-21669637,21669871-21670131,21670573-216707... 29 4.0
08_02_0890 + 22309061-22309086,22309172-22309253,22309349-223094... 29 5.3
01_06_1524 - 37980345-37980587,37980671-37980845,37980938-379810... 29 5.3
>03_06_0129 -
31883732-31883854,31883989-31884051,31884213-31884272,
31884724-31884784,31884934-31885004,31885313-31885389,
31885856-31885913,31885995-31886048,31886279-31886297,
31886359-31886466,31886574-31886690,31886836-31886919,
31887079-31887171,31887279-31887499,31888294-31888371,
31889237-31889499,31890109-31890247
Length = 562
Score = 93.9 bits (223), Expect = 1e-19
Identities = 46/108 (42%), Positives = 66/108 (61%), Gaps = 1/108 (0%)
Frame = +2
Query: 257 VEHRIFVNRSLHLENVKFYGFDMDYTLAEYKSPQYETLGFNLTKERLVVK-GYPREILEF 433
V IF NRSL++ N+ GFDMDYTLA+YK +E L ++ T E+LV GYP E+L +
Sbjct: 79 VGKEIFCNRSLNMRNITAVGFDMDYTLAQYKPETFEALAYHGTIEKLVKDLGYPEELLTW 138
Query: 434 EYDPSFPVRGLWFDTLYGNLLKVDAYGNILVCVHGFEFLKQKSTALLY 577
++D + VRGL D GN+LK+D + + V HGF + ++ Y
Sbjct: 139 QFDWKYMVRGLVLDKKRGNILKMDRHKYVKVAYHGFREMSKEEKVSAY 186
>12_01_0513 +
4059586-4059620,4060155-4060365,4060470-4060724,
4060801-4060865,4061120-4061194,4061440-4061575,
4061661-4061753,4061838-4061983,4062074-4062174,
4062259-4062434,4063823-4063900,4063991-4064199,
4064286-4064378,4064888-4064971,4065405-4065506,
4065591-4065678,4065756-4065809,4065869-4066075,
4066970-4067026,4067171-4067225,4067737-4067813,
4067941-4068007,4068383-4068444,4068541-4068603,
4068702-4068830
Length = 905
Score = 84.2 bits (199), Expect = 1e-16
Identities = 41/115 (35%), Positives = 67/115 (58%)
Frame = +2
Query: 266 RIFVNRSLHLENVKFYGFDMDYTLAEYKSPQYETLGFNLTKERLVVKGYPREILEFEYDP 445
+IF +R++++E++K GF M+YTL YK +E L + K+RLV YP +ILE+ Y+
Sbjct: 381 QIFCSRTVNMEDIKAIGFKMEYTLINYKVT-FENLAYVEAKKRLVNGKYPEKILEWNYNS 439
Query: 446 SFPVRGLWFDTLYGNLLKVDAYGNILVCVHGFEFLKQKSTALLYDAEGLFYRQNF 610
+RGL D GN++KVD Y N+ + HG + + + +Y + +F F
Sbjct: 440 EHMIRGLIIDKKKGNIIKVDHYNNVKMSYHGMNEMPYEESKNVYGSTFMFEEPEF 494
>09_04_0174 +
15346123-15346207,15346350-15346502,15346623-15346759,
15346856-15347005,15347405-15347506,15347832-15347996,
15348402-15348499,15348704-15348827,15349056-15349145,
15349555-15349599,15350438-15350833
Length = 514
Score = 83.0 bits (196), Expect = 2e-16
Identities = 39/85 (45%), Positives = 61/85 (71%), Gaps = 1/85 (1%)
Frame = +2
Query: 269 IFVNRSLHLENVKFYGFDMDYTLAEYKSPQYETLGFNLTKERLVVK-GYPREILEFEYDP 445
I+VN+++ L++++ YGFD DYTL+ Y S + L ++L K+ LV + YP L++EYD
Sbjct: 81 IYVNKNVKLDDLQVYGFDYDYTLSHY-SEHLQCLIYDLAKKHLVNELKYPESCLKYEYDH 139
Query: 446 SFPVRGLWFDTLYGNLLKVDAYGNI 520
FP+RGL++D L G LLK+D +G+I
Sbjct: 140 GFPIRGLYYDRLKGCLLKLDFFGSI 164
>01_01_1049 +
8275837-8275859,8276428-8276503,8276545-8276634,
8276721-8276836,8276918-8277017,8277808-8277879,
8277954-8278001,8278093-8278170,8278272-8278391,
8278496-8278601,8279574-8279737,8280403-8280537,
8280766-8280896,8282016-8282094,8282284-8282373
Length = 475
Score = 45.6 bits (103), Expect = 4e-05
Identities = 30/82 (36%), Positives = 42/82 (51%)
Frame = +2
Query: 407 GYPREILEFEYDPSFPVRGLWFDTLYGNLLKVDAYGNILVCVHGFEFLKQKSTALLYDAE 586
G+P + LEF DP +RGL D GNL+K D +G I +HG + L + + +Y E
Sbjct: 51 GFPVDDLEF--DPDLVIRGLIMDKDKGNLVKADRFGYIKRAMHGTQMLSTSAVSEIYGRE 108
Query: 587 GLFYRQNFLFGKEERIWQHLQT 652
+ R KE R W+ L T
Sbjct: 109 LVDLR------KESR-WEFLNT 123
>01_06_1745 -
39609894-39610030,39610127-39610223,39613856-39613996,
39614094-39614272,39615067-39615111,39615802-39615858,
39615935-39616163,39616348-39616418,39619527-39619635
Length = 354
Score = 32.7 bits (71), Expect = 0.33
Identities = 20/63 (31%), Positives = 29/63 (46%)
Frame = -3
Query: 564 VDFCFKNSNPCTHTKIFP*ASTLSKFPYNVSNQRPLTGNEGSYSNSNISLGYPLTTNLSL 385
VDFCFK + HT + S ++ Y V N T +EG S+ + G L L
Sbjct: 100 VDFCFKKNFQLFHTSLI---SKVAFCGYQVKNLGKFTDSEGDESDEEVPPGIRLYPKLDG 156
Query: 384 VKL 376
++L
Sbjct: 157 IRL 159
>08_01_0265 + 2148255-2150219,2150735-2150812
Length = 680
Score = 31.1 bits (67), Expect = 1.00
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Frame = +2
Query: 131 KINNY-QRLNIIFNSKFKMDVCKENECLTLQDKNIMSKKYY---RRVEHRIFVNRSLHLE 298
KINNY + LN+ NS + +V K L + I + + R+ +HR F SLH +
Sbjct: 520 KINNYVELLNLYINSGRQTEVSKVVNTLKRRGLCIHAACSWITVRKKDHRFFFKDSLHPQ 579
Query: 299 NVKFYGFDMDYTLAEYKSPQY 361
+ + Y +D L E K Y
Sbjct: 580 SSEIYR-KLDSLLKEIKQLGY 599
>04_03_0256 -
13564070-13564456,13564543-13565299,13565734-13566535,
13566884-13566917
Length = 659
Score = 31.1 bits (67), Expect = 1.00
Identities = 16/52 (30%), Positives = 29/52 (55%)
Frame = -1
Query: 656 PKSADVAKFFLLFQKENFAYKTILLHHKAALSTFVLKIQIHVHTLKYSRRHR 501
P+SA + FF + K+ KTIL+ AA+ +L + + ++ K R++R
Sbjct: 299 PQSATYSLFFCPYTKQKLQTKTILVSILAAIGALILVVVVAIYVQK-RRKYR 349
>05_07_0284 - 28943527-28943625,28944417-28944785
Length = 155
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = -3
Query: 477 VSNQRPLTGNEGSYSNSNISLGYPLTTNLSLVKLNPNVSYCGDLY 343
+ + PL G +G Y N + +P T + S + NP ++ ++Y
Sbjct: 111 LDRRSPLRGVQGQYLNLRTNSHHPCTPSASYIYANPEIARGAEIY 155
>07_03_0809 -
21669632-21669637,21669871-21670131,21670573-21670752,
21671458-21672819
Length = 602
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +2
Query: 281 RSLHLENVKFYGFDMDYTLAEYKSPQYETLG 373
R LHLE+V+F G DYTL + P E LG
Sbjct: 300 RELHLEHVRFNG---DYTLDDAMLPLLEYLG 327
>08_02_0890 +
22309061-22309086,22309172-22309253,22309349-22309441,
22309526-22309720
Length = 131
Score = 28.7 bits (61), Expect = 5.3
Identities = 24/70 (34%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Frame = +2
Query: 344 YKSPQYETLGFNLTKERLVVKGYPREILEFEYDPSFPVRGLWFD--TLYGNLLKVDAYGN 517
YK P L E L V G R EF Y PS P WFD TL + + + +
Sbjct: 38 YKQPNLSNLCGYYVCEMLRVCGRYRT--EFTYLPSIPYNASWFDQKTLINLCVDLCRFIH 95
Query: 518 ILVCVHGFEF 547
+C H EF
Sbjct: 96 RDICNHLEEF 105
>01_06_1524 -
37980345-37980587,37980671-37980845,37980938-37981001,
37981080-37981194,37982262-37982406,37984671-37984981
Length = 350
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +2
Query: 197 ENECLTLQDKNIMSKKYYRRV-EHRIFVNRSLHLENVKFYGFDMDYTLAEYKS 352
+NE ++DK++ +K RR +++I + + K D+DYTL +++S
Sbjct: 128 QNEVTAIKDKDVYKQKLKRRASQYKIKILNPCR-KGKKLLVLDIDYTLFDHRS 179
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,806,290
Number of Sequences: 37544
Number of extensions: 366580
Number of successful extensions: 777
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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