Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30p15
         (758 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF099002-1|AAK68587.1|  559|Caenorhabditis elegans Hypothetical ...   141   4e-34
AF099002-2|AAC68740.2|  556|Caenorhabditis elegans Hypothetical ...   139   2e-33
AF099002-3|AAO91691.1|  570|Caenorhabditis elegans Hypothetical ...    68   7e-21
AF003132-1|AAB54133.3|  798|Caenorhabditis elegans Hypothetical ...    33   0.17 
AC006605-2|AAL00853.1|  139|Caenorhabditis elegans Hypothetical ...    32   0.51 
AY204199-1|AAO39200.1|  360|Caenorhabditis elegans nuclear recep...    31   1.2  
AL022288-6|CAA18368.1|  341|Caenorhabditis elegans Hypothetical ...    31   1.2  
AF040655-11|AAB95040.1|  251|Caenorhabditis elegans Hypothetical...    30   1.6  
AC006644-6|AAZ91358.1|  958|Caenorhabditis elegans Hypothetical ...    30   2.1  
Z82073-3|CAB04926.1|  631|Caenorhabditis elegans Hypothetical pr...    28   6.3  
AF025452-1|AAB70944.1|  411|Caenorhabditis elegans C-type lectin...    28   6.3  
Z46935-1|CAA87049.2|  519|Caenorhabditis elegans Hypothetical pr...    28   8.3  
AF025465-8|AAO38628.1|  233|Caenorhabditis elegans Hypothetical ...    28   8.3  

>AF099002-1|AAK68587.1|  559|Caenorhabditis elegans Hypothetical
           protein Y71H10B.1b protein.
          Length = 559

 Score =  141 bits (342), Expect = 4e-34
 Identities = 63/111 (56%), Positives = 76/111 (68%)
 Frame = +2

Query: 245 YYRRVEHRIFVNRSLHLENVKFYGFDMDYTLAEYKSPQYETLGFNLTKERLVVKGYPREI 424
           Y R    R+FVNRSL LE +  +GFDMDYTL +YK+P  E L FN+  +RLV  GYP EI
Sbjct: 8   YKRNPAERVFVNRSLRLEKITHFGFDMDYTLVQYKAPDMEYLAFNMAVQRLVDTGYPEEI 67

Query: 425 LEFEYDPSFPVRGLWFDTLYGNLLKVDAYGNILVCVHGFEFLKQKSTALLY 577
             F+YDP FPVRGLWF+  +GNLLKVD +GNIL  +HG  FLK      +Y
Sbjct: 68  KSFKYDPIFPVRGLWFEFQFGNLLKVDGFGNILGGIHGLRFLKNHEIEEMY 118


>AF099002-2|AAC68740.2|  556|Caenorhabditis elegans Hypothetical
           protein Y71H10B.1a protein.
          Length = 556

 Score =  139 bits (337), Expect = 2e-33
 Identities = 61/106 (57%), Positives = 75/106 (70%)
 Frame = +2

Query: 260 EHRIFVNRSLHLENVKFYGFDMDYTLAEYKSPQYETLGFNLTKERLVVKGYPREILEFEY 439
           + R+FVNRSL LE +  +GFDMDYTL +YK+P  E L FN+  +RLV  GYP EI  F+Y
Sbjct: 10  DERVFVNRSLRLEKITHFGFDMDYTLVQYKAPDMEYLAFNMAVQRLVDTGYPEEIKSFKY 69

Query: 440 DPSFPVRGLWFDTLYGNLLKVDAYGNILVCVHGFEFLKQKSTALLY 577
           DP FPVRGLWF+  +GNLLKVD +GNIL  +HG  FLK      +Y
Sbjct: 70  DPIFPVRGLWFEFQFGNLLKVDGFGNILGGIHGLRFLKNHEIEEMY 115


>AF099002-3|AAO91691.1|  570|Caenorhabditis elegans Hypothetical
           protein Y71H10B.1c protein.
          Length = 570

 Score = 67.7 bits (158), Expect(2) = 7e-21
 Identities = 29/47 (61%), Positives = 34/47 (72%)
 Frame = +2

Query: 323 MDYTLAEYKSPQYETLGFNLTKERLVVKGYPREILEFEYDPSFPVRG 463
           MDYTL +YK+P  E L FN+  +RLV  GYP EI  F+YDP FPVRG
Sbjct: 1   MDYTLVQYKAPDMEYLAFNMAVQRLVDTGYPEEIKSFKYDPIFPVRG 47



 Score = 50.8 bits (116), Expect(2) = 7e-21
 Identities = 22/44 (50%), Positives = 28/44 (63%)
 Frame = +2

Query: 446 SFPVRGLWFDTLYGNLLKVDAYGNILVCVHGFEFLKQKSTALLY 577
           +F   GLWF+  +GNLLKVD +GNIL  +HG  FLK      +Y
Sbjct: 86  NFLYLGLWFEFQFGNLLKVDGFGNILGGIHGLRFLKNHEIEEMY 129


>AF003132-1|AAB54133.3|  798|Caenorhabditis elegans Hypothetical
           protein F37E3.1 protein.
          Length = 798

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
 Frame = +2

Query: 380 LTKERLVVKGYPREILEF-EYDPSFPVRGLWFDTLYGNLLKVD--AYGNILVCVHGFEFL 550
           + K +   K   RE+L F E +PS P+  L F+T++G +L++    Y  I  C    E L
Sbjct: 325 IEKNQFNRKACARELLAFAEENPSVPIGFLIFETIFGQMLRLPHAPYPAIFHCSLVLELL 384

Query: 551 KQK 559
           K K
Sbjct: 385 KLK 387


>AC006605-2|AAL00853.1|  139|Caenorhabditis elegans Hypothetical
           protein C07H6.9 protein.
          Length = 139

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 12/39 (30%), Positives = 25/39 (64%)
 Frame = -2

Query: 247 VFLGHNIFILKSQALVFLTNIHFKFRIKNYVKSLIIVYF 131
           V+LG   F +K+++ V+L+ ++ +F +      LI++YF
Sbjct: 14  VYLGSAYFYMKTESFVYLSLVYIQFSLFFLTSILIVIYF 52


>AY204199-1|AAO39200.1|  360|Caenorhabditis elegans nuclear receptor
           NHR-113 protein.
          Length = 360

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 3/112 (2%)
 Frame = +2

Query: 107 FRCTI-NFLKINNYQRLNIIFNSKFKMDVCKENECLTLQDKNIMSKKYYRRVEHR-IFVN 280
           FR T+ N    N      I F  KF    C+ N CL    K  M K Y R++    +   
Sbjct: 52  FRRTVKNQFTCNANNDCVISFEKKFTCRACRYNNCL----KAGMRKDYIRKINSNYVPKQ 107

Query: 281 RSLHLENVKFYGFDMDYTLAEYKSPQYETLGFN-LTKERLVVKGYPREILEF 433
           + ++++  +  G     + +   SP    +    + K   ++K YP+E+L+F
Sbjct: 108 KCVNVDASRSIGTSSASSSSSESSPLVSPIIEKPIGKYSKILKRYPQELLQF 159


>AL022288-6|CAA18368.1|  341|Caenorhabditis elegans Hypothetical
           protein ZK1025.9 protein.
          Length = 341

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 3/112 (2%)
 Frame = +2

Query: 107 FRCTI-NFLKINNYQRLNIIFNSKFKMDVCKENECLTLQDKNIMSKKYYRRVEHR-IFVN 280
           FR T+ N    N      I F  KF    C+ N CL    K  M K Y R++    +   
Sbjct: 33  FRRTVKNQFTCNANNDCVISFEKKFTCRACRYNNCL----KAGMRKDYIRKINSNYVPKQ 88

Query: 281 RSLHLENVKFYGFDMDYTLAEYKSPQYETLGFN-LTKERLVVKGYPREILEF 433
           + ++++  +  G     + +   SP    +    + K   ++K YP+E+L+F
Sbjct: 89  KCVNVDASRSIGTSSASSSSSESSPLVSPIIEKPIGKYSKILKRYPQELLQF 140


>AF040655-11|AAB95040.1|  251|Caenorhabditis elegans Hypothetical
           protein T24E12.2 protein.
          Length = 251

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/67 (22%), Positives = 31/67 (46%)
 Frame = +2

Query: 98  QCMFRCTINFLKINNYQRLNIIFNSKFKMDVCKENECLTLQDKNIMSKKYYRRVEHRIFV 277
           +C  +C I    +     +NII  ++ +      N+ L L++ N+         + +IF+
Sbjct: 37  ECYIKCEIQRADLEEINAMNIIEINRLRESNTHANKALRLENSNLRDHVLQLTNDCQIFL 96

Query: 278 NRSLHLE 298
           N+  +LE
Sbjct: 97  NKCSNLE 103


>AC006644-6|AAZ91358.1|  958|Caenorhabditis elegans Hypothetical
           protein F55A3.1 protein.
          Length = 958

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 21/71 (29%), Positives = 37/71 (52%)
 Frame = -2

Query: 253 TIVFLGHNIFILKSQALVFLTNIHFKFRIKNYVKSLIIVYFQKIYSTSEHALFLLSTVPL 74
           +++FL H  +++    L   T  +F FRI N+  S+I ++ +  Y  S  A+ LL  + +
Sbjct: 412 SLIFLEHVFWVISLNTLFTATFAYFPFRIGNWFLSVIGLHGKISYFPSIVAM-LLGYIQI 470

Query: 73  ANIWNKIFTIL 41
           A I   I  I+
Sbjct: 471 AIITYVIHQIM 481


>Z82073-3|CAB04926.1|  631|Caenorhabditis elegans Hypothetical
           protein W06D12.5 protein.
          Length = 631

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 476 TLYGNLLKVDAYGNILVCVHGFEFL 550
           T YG++      G +LVCV+GF F+
Sbjct: 330 TGYGSIAPESTLGQVLVCVYGFIFV 354


>AF025452-1|AAB70944.1|  411|Caenorhabditis elegans C-type lectin
           protein 2 protein.
          Length = 411

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 5   SKENLGLWKVVAEDCKNFIPYICKR 79
           S+ NLG W  V  DCK++  ++CKR
Sbjct: 254 SEYNLGQWFGV--DCKDYYSFVCKR 276


>Z46935-1|CAA87049.2|  519|Caenorhabditis elegans Hypothetical
           protein M106.2 protein.
          Length = 519

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/41 (29%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -2

Query: 151 SLIIVYFQK-IYSTSEHALFLLSTVPLANIWNKIFTILGYH 32
           SLI+ YF   +Y  +   +F+L+ + + +I + I  + G+H
Sbjct: 353 SLIVFYFAPFLYEGTSFVIFILTLLLVCSIVHNIIHVFGFH 393


>AF025465-8|AAO38628.1|  233|Caenorhabditis elegans Hypothetical
           protein K02E7.4 protein.
          Length = 233

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 17/62 (27%), Positives = 30/62 (48%)
 Frame = -2

Query: 193 TNIHFKFRIKNYVKSLIIVYFQKIYSTSEHALFLLSTVPLANIWNKIFTILGYHLPKTEI 14
           TN+ F  R+ N+V   +  + Q +    ++ LF+ ST    N   KI  +   + P  ++
Sbjct: 117 TNVDFSERLDNFVSEFLKTHVQMLSVEEQYKLFMNST----NFMFKISNLRSLN-PDFQV 171

Query: 13  FF 8
           FF
Sbjct: 172 FF 173


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,542,475
Number of Sequences: 27780
Number of extensions: 382551
Number of successful extensions: 955
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)