Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte30p13
(792 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0043 - 14390398-14391531,14391850-14393691,14393800-143968... 37 0.021
10_08_0829 - 20871810-20872011,20873226-20873359,20873480-208773... 34 0.15
03_01_0027 - 250837-250877,250972-252909,253733-253805,254476-25... 33 0.20
10_08_0558 + 18756797-18756887,18757189-18757262,18759881-187600... 31 1.0
04_04_0340 + 24517562-24520318 30 1.8
09_06_0245 - 21833622-21833901,21833988-21834059,21834152-218342... 29 4.2
04_04_0634 - 26777889-26778452,26778526-26778797,26778905-267791... 29 4.2
09_01_0014 + 357398-357583,360213-360323,360520-360676,361067-36... 29 5.6
01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,117... 28 7.4
03_01_0614 + 4515515-4515540,4515988-4516209,4516681-4516768,451... 28 9.8
01_01_0568 - 4207812-4209587,4210056-4210291,4210647-4210793,421... 28 9.8
>10_08_0043 -
14390398-14391531,14391850-14393691,14393800-14396825,
14397510-14397609
Length = 2033
Score = 36.7 bits (81), Expect = 0.021
Identities = 20/62 (32%), Positives = 34/62 (54%)
Frame = +2
Query: 107 KMNSTVSDDLTRENSASEISKCIKDLSANNRNLSLLHKELLEINLSVKTYVQESKKRLQG 286
K+N + EN+ SE+ K +++L+ NR+ LL +EL + S+K E + +Q
Sbjct: 374 KLNELKQTKVNLENAVSELKKEVENLTEQNRSSELLIQELRDEINSLKDSKNELQNEIQS 433
Query: 287 LR 292
LR
Sbjct: 434 LR 435
>10_08_0829 - 20871810-20872011,20873226-20873359,20873480-20877313,
20878057-20878177,20878414-20878451,20879096-20879218,
20879308-20879505,20880270-20880356
Length = 1578
Score = 33.9 bits (74), Expect = 0.15
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 3/94 (3%)
Frame = +2
Query: 125 SDDLTRENSASEISKCIKDLSANNRNLSL---LHKELLEINLSVKTYVQESKKRLQGLRL 295
++DLTR N E +K + N + L E+L + S+ E+ K L+GL
Sbjct: 1291 NEDLTRRNQLMEKELDLKTSQNKDENTNKQVSLQDEVLMLQSSLDEAKFENGK-LEGLLQ 1349
Query: 296 DLAHEARSSHQVVELLTEK*QCQQSQQHRANEIK 397
L+ E +LT+K C Q + ANE K
Sbjct: 1350 SLSEECEELKAQKGMLTDKVSCMQDTLNAANEGK 1383
Score = 28.7 bits (61), Expect = 5.6
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Frame = +2
Query: 131 DLTRENSASEISKCIKDLSANN---RNLSLLHKELLEINLSVKTYVQESKKRLQGLRLDL 301
+L ++S E + I+++S ++ L E+L + S+ E K +L+GL L
Sbjct: 1146 ELKSKSSDYEKQQIIEEISVLKIQVHKIAGLQDEVLTLQSSLDEAKFE-KGKLEGLIQSL 1204
Query: 302 AHEARSSHQVVELLTEK*QCQQSQQHRANEIK 397
+ E +LT+K C Q + ANE K
Sbjct: 1205 SEECEELKAQKGMLTDKVSCMQDTLNAANEGK 1236
>03_01_0027 -
250837-250877,250972-252909,253733-253805,254476-254555,
255336-255595,255721-255785,256747-256839
Length = 849
Score = 33.5 bits (73), Expect = 0.20
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = +2
Query: 107 KMNSTVSDDLTRENSASEISKCIKDLSANNRNLSLLHKELLEINLSVKTYVQESKKRLQG 286
K+N + EN+ SE+ K ++ L+ NR+ LL +EL + S+ E + +Q
Sbjct: 594 KLNELKQTKVNLENAVSELKKEVESLTEQNRSSELLIQELRDEINSLTDSRNELQNEIQS 653
Query: 287 LR 292
LR
Sbjct: 654 LR 655
>10_08_0558 +
18756797-18756887,18757189-18757262,18759881-18760069,
18760190-18760309,18760457-18760521,18760684-18760828,
18761304-18763337,18763904-18764025,18764127-18764309,
18764635-18764690,18765086-18765141
Length = 1044
Score = 31.1 bits (67), Expect = 1.0
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
Frame = +2
Query: 116 STVSDDLTRENSASE---ISKCIKDLSANNRN--LSLLHKELLEINLSVKTYVQE 265
S D+L EN + + C KD+ +R+ ++LL+KEL I V+TY++E
Sbjct: 780 SNERDNLFEENEQKDKELAANCQKDMFLQDRDAEIALLNKELASIKDQVQTYLEE 834
Score = 28.7 bits (61), Expect = 5.6
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Frame = +2
Query: 143 ENSASEISKCIKDLSA----NNRNLSLLHKELLEINLSVKTYVQESKKRLQGLRLDLAHE 310
+ S SE+ +KDL N+ +SLLH+E LE + + S G ++D++
Sbjct: 448 QESNSELLLAVKDLDEMLEQKNKEISLLHEETLEDPQEAEYELALSNVHNAGHKIDISET 507
Query: 311 ARSSHQVVELLTE 349
+ + EL+ +
Sbjct: 508 SSVQEKEDELMLD 520
>04_04_0340 + 24517562-24520318
Length = 918
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +2
Query: 203 LSLLHKELLEINLSVKTYVQESKKRLQGLRLDLAHEARSSHQV 331
L L+H+E+ I V + + +R+ AHEA SSHQ+
Sbjct: 402 LQLIHEEITNIRGKVDDSFKVQEVSCHVMRMAAAHEASSSHQL 444
>09_06_0245 -
21833622-21833901,21833988-21834059,21834152-21834231,
21834366-21835109,21835212-21835547
Length = 503
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/47 (27%), Positives = 27/47 (57%)
Frame = +2
Query: 98 EDCKMNSTVSDDLTRENSASEISKCIKDLSANNRNLSLLHKELLEIN 238
+D + +D + EN+ E+S+ +LS+ NRNL+ +++ I+
Sbjct: 349 DDDSASDLANDKVLVENTKKELSRIQAELSSTNRNLNFSDQQIEAIS 395
>04_04_0634 -
26777889-26778452,26778526-26778797,26778905-26779117,
26779497-26779578
Length = 376
Score = 29.1 bits (62), Expect = 4.2
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +3
Query: 183 FPLITETSHYYTKNFWKLTFRLKPMYRRVKN 275
+P T T+ T FWK T R KP+Y VKN
Sbjct: 121 YPTGTRTNRATTAGFWKATGRDKPIY--VKN 149
>09_01_0014 +
357398-357583,360213-360323,360520-360676,361067-361233,
362012-362122,362206-362349,362436-362476,364134-364174,
364175-364261,365402-365724
Length = 455
Score = 28.7 bits (61), Expect = 5.6
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +1
Query: 478 TWYKQMIDNERQNLALYLADDAFLEWFGRTIKTR--KKVSAFLKHD 609
TW+ I++ Q+L LAD+ F W G TR K S F HD
Sbjct: 103 TWF---INSAEQSLGYILADNGFDVWIGNVRGTRWSKGHSTFSVHD 145
>01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,
1171148-1171398,1171442-1171687,1172220-1172415,
1172796-1172876,1172966-1173169,1173671-1173880,
1173953-1174174,1174437-1174480,1174974-1175052,
1175066-1175227,1175337-1175564,1175786-1175815,
1175905-1176273,1176356-1176571,1177202-1177683,
1177930-1177975
Length = 1352
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +1
Query: 562 RTIKTRKKVSAFLKHDMHCSKHDFTSVESIEKIXNRHEKLHRRDD 696
R+ K S +H H S D + ES E+ +RH+K HR D
Sbjct: 1226 RSSKKDHSSSRSHRHHHHRSSGDDSGSESEERGRSRHKKHHRSSD 1270
>03_01_0614 +
4515515-4515540,4515988-4516209,4516681-4516768,
4517084-4517123,4517259-4517305,4517464-4517584,
4517931-4518091
Length = 234
Score = 27.9 bits (59), Expect = 9.8
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +2
Query: 128 DDLTRENS-ASEISKCIKDLSANNRNLSLLHKELLEINLSVKTYVQESKK 274
D++ R S A+ + K K ++ + LH++ LE ++ + T+VQ+ KK
Sbjct: 165 DEIMRSYSPAALLDKLQKSMAKLDEESEELHQKFLEKDIDLPTFVQKYKK 214
>01_01_0568 -
4207812-4209587,4210056-4210291,4210647-4210793,
4211857-4212145
Length = 815
Score = 27.9 bits (59), Expect = 9.8
Identities = 31/113 (27%), Positives = 45/113 (39%), Gaps = 10/113 (8%)
Frame = +2
Query: 128 DDLTRENSASEISKCIKDLSANNRNLSLLHKELLEINLSVKTYVQESKKRLQGLR----- 292
D R+ +++ + K L NR+ L KEL E N T E K + L
Sbjct: 647 DSEARKALEADLDEATKSLDEMNRSALSLSKELEETNSRKDTLEAEKKMLSKALAEQQKI 706
Query: 293 LDLAHEARSSHQ--VVELLTEK*QCQQSQQHRANEI---KG*LQDYHRRTSTN 436
AHE Q + L TEK + +H E+ KG + R+ ST+
Sbjct: 707 TTEAHENTEDAQNLISRLQTEKESFEMRARHLEEELALAKGEILRLRRQISTS 759
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,616,229
Number of Sequences: 37544
Number of extensions: 352322
Number of successful extensions: 894
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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