Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte30p11
(772 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces pomb... 69 1e-12
SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family protein|Schizosaccha... 68 2e-12
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 32 0.10
SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|... 27 3.9
SPAC12G12.11c |||DUF544 family protein|Schizosaccharomyces pombe... 26 5.2
SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10 |Sch... 26 5.2
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr... 26 6.9
SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po... 26 6.9
SPCC965.11c |||amino acid transporter |Schizosaccharomyces pombe... 25 9.1
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1... 25 9.1
>SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 334
Score = 68.5 bits (160), Expect = 1e-12
Identities = 51/167 (30%), Positives = 79/167 (47%), Gaps = 5/167 (2%)
Frame = +3
Query: 282 SPWPTLAACVCYAYCAKELGPKLMANRKPFELRNILVVYNMAQTIFSAWIF---YEYLMS 452
S W ++ + Y G +M NRKP + R + ++N TI S + E +
Sbjct: 53 SQWSSVIVSITAYYVIILSGRAIMTNRKPLKQRRLFQLHNFILTIISGALLALLVEEVFR 112
Query: 453 GWWGHYDFRCQLVDYSRSPMAMRMANTCWWYYFSKFTEFMDTLFFVLRKKNEHVSTLHVI 632
+ + F C V SR R+ + Y +K+ E MDT+F L+KK ++ LH
Sbjct: 113 NYMRNGLFYC--VCDSRH-FTQRLVTLYYLNYLTKYLELMDTVFLFLKKKP--LAFLHCY 167
Query: 633 HHGIMPMSVWFGLKFAPGGHSTFFAL--LNTFVHIVMYFYYMVAAMG 767
HHGI + + L G S + + LN +VH++MY YY +AA G
Sbjct: 168 HHGITALLCFTQLL---GRTSVQWGVIGLNLYVHVIMYSYYFLAACG 211
>SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 67.7 bits (158), Expect = 2e-12
Identities = 54/192 (28%), Positives = 82/192 (42%), Gaps = 8/192 (4%)
Frame = +3
Query: 216 SWYSDLMDSRGDPRVKDWPMMS-----SPWPTLAACVCYAYCAKELGPKLMANRKPFELR 380
SW + L D+ R + + S P +A + Y +G ++M NR+P L+
Sbjct: 6 SWLNSLADATFGKRPSSFEFIVNKTRFSSAPVVATIIISYYLLILVGGRIMRNRQPIRLQ 65
Query: 381 NILVVYNMAQTIFS---AWIFYEYLMSGWWGHYDFRCQLVDYSRSPMAMRMANTCWWYYF 551
I YN+ +I S A + +E + + H F + + + C Y
Sbjct: 66 KIFQYYNLTFSIASAILALLIFEQVAPAIYKH-GFFFSICNEKAWTQPLVFLYYC--AYI 122
Query: 552 SKFTEFMDTLFFVLRKKNEHVSTLHVIHHGIMPMSVWFGLKFAPGGHSTFFALLNTFVHI 731
SKF E DT F VLRKK + LH HHG + V+ + S +N VH+
Sbjct: 123 SKFLELTDTFFLVLRKK--PLQFLHCYHHGATAVLVYTQI-VGRTSISWLIIEINLLVHV 179
Query: 732 VMYFYYMVAAMG 767
MY+YY + A G
Sbjct: 180 TMYYYYYLVAKG 191
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 31.9 bits (69), Expect = 0.10
Identities = 26/89 (29%), Positives = 36/89 (40%), Gaps = 6/89 (6%)
Frame = -3
Query: 665 EPNRHRHDPVMYHMQRGHVLVLLP*HKEKRVHK-----FCELAEVVPPTRVRHPHG-HWT 504
EP H P M+H + G + P H E H E E +PP + H G H
Sbjct: 267 EPGEHMPPPPMHH-EPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMP 325
Query: 503 PRVIYQLTPKVIVAPPSAHQILVEYPGAE 417
P ++ + + PP H L E+ G E
Sbjct: 326 PPPMHHEPGEHMPPPPFKHHELEEHEGPE 354
>SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 104
Score = 26.6 bits (56), Expect = 3.9
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 315 YAYCAKELGPKLMANRKPFELRNILVVYNMAQTIFSAWI 431
+A A P + + F L+NI+V+ N ++ AWI
Sbjct: 12 FAVFASSDKPNNCSRKNMFFLKNIIVLSNYLYLLYKAWI 50
>SPAC12G12.11c |||DUF544 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 26.2 bits (55), Expect = 5.2
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = -1
Query: 385 IFRSSNGFRLAISLGPSSFAQYA*HTHAARVGHGDDIIGQSF 260
+FRSS+ F S P SFAQ+ T + G+D++ ++F
Sbjct: 241 VFRSSH-FSTMYS-NPDSFAQFTLVTDSGYARTGEDVVWETF 280
>SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 370
Score = 26.2 bits (55), Expect = 5.2
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +3
Query: 417 FSAWIFYEYLMSGWWGHYDFRCQL 488
F+ +IFYEYL W ++ C L
Sbjct: 4 FNDYIFYEYLKKTNWNIHNLYCNL 27
>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 905
Score = 25.8 bits (54), Expect = 6.9
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = -3
Query: 761 GSHHVVKVHYDVNERVEQSEESAVTTRREFKSEPNRHRHDPVMYHMQRGHVL 606
G+ +V + + V +SA++ R + K RHRHD VM H Q +L
Sbjct: 856 GNPYVDPSLFTIEAVVLSFPKSALSVRVKHK---RRHRHDRVMKHKQTYTIL 904
>SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 547
Score = 25.8 bits (54), Expect = 6.9
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Frame = +2
Query: 266 LADDVIAVANPSRVRVLRILREGAWPQ---TYGQSKTIRTSKYSRRLQHGSD 412
L + AVANP V V IL E + Q +G+SK S LQ +D
Sbjct: 481 LVEGYPAVANPEGVEVFEILDEMFFQQFTNVFGESKHFNKENVSWALQLVND 532
>SPCC965.11c |||amino acid transporter |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 537
Score = 25.4 bits (53), Expect = 9.1
Identities = 9/37 (24%), Positives = 17/37 (45%)
Frame = +3
Query: 363 KPFELRNILVVYNMAQTIFSAWIFYEYLMSGWWGHYD 473
KPF + + Y + F W+ Y+++ W Y+
Sbjct: 460 KPFAAGDFVDAYILLPLFFVIWLSYKFIKKTKWVSYE 496
>SPBC947.11c |elg1||DNA replication factor C complex subunit
Elg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 920
Score = 25.4 bits (53), Expect = 9.1
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 317 RILREGAWPQTYGQSKTIRTSKYSRRLQHGSDYLQ 421
+IL +G W Y SKT +S+ L +D+L+
Sbjct: 318 QILEKGLWVSKYAPSKTQDCCAFSQCLSKIADWLR 352
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,270,911
Number of Sequences: 5004
Number of extensions: 68342
Number of successful extensions: 197
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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