Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte30p11
(772 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0821 - 27960414-27961253 38 0.009
06_01_0175 - 1371089-1371706,1371812-1371994,1372069-1372324,137... 30 2.4
06_03_0999 - 26752410-26752523,26752601-26752830,26752914-267531... 29 4.1
06_01_0173 - 1364219-1364836,1364941-1365123,1365215-1365470,136... 29 4.1
01_05_0508 - 22804809-22805231,22805775-22806797 29 4.1
07_01_0441 + 3345616-3346149 29 5.4
06_03_0992 - 26680555-26680840,26680893-26681279,26681364-266824... 29 5.4
05_04_0183 - 18849749-18850225,18850305-18850431,18851762-18853515 29 5.4
12_01_0811 - 7440413-7440712,7441285-7441398,7441448-7441705,744... 28 7.2
07_03_1539 + 27567397-27568985,27569153-27569279,27569361-27569837 28 7.2
06_01_0824 - 6219477-6219556,6220427-6220808,6221415-6221448,622... 28 7.2
>03_05_0821 - 27960414-27961253
Length = 279
Score = 37.9 bits (84), Expect = 0.009
Identities = 23/75 (30%), Positives = 35/75 (46%)
Frame = +3
Query: 543 YYFSKFTEFMDTLFFVLRKKNEHVSTLHVIHHGIMPMSVWFGLKFAPGGHSTFFALLNTF 722
+Y SK E DTL +L ++ ++ LHV HH + + L A N
Sbjct: 125 FYLSKVYELGDTLLILLGRRP--LTLLHVYHHAAVIAMCYLWLATRQSLMPIALAT-NAA 181
Query: 723 VHIVMYFYYMVAAMG 767
VH+ MY YY+ ++G
Sbjct: 182 VHVAMYGYYLCCSLG 196
>06_01_0175 -
1371089-1371706,1371812-1371994,1372069-1372324,
1372407-1372976,1373423-1373529,1373664-1374136,
1374279-1374372
Length = 766
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +3
Query: 387 LVVYNMAQTIFSAWIFYEYLMSGWWGHYDFRCQLVDYSRSPMAMRMANT 533
+++ N+ TIF+ + E L WWG F C + + P+ + A T
Sbjct: 451 ILIANIGTTIFACEYYNEELQLPWWGVL-FACSIAFFFTLPIGIIKATT 498
>06_03_0999 -
26752410-26752523,26752601-26752830,26752914-26753169,
26753763-26753828,26753921-26754046,26754148-26754288,
26754377-26754387,26754523-26754670,26755326-26755454,
26755573-26755710,26755808-26755876,26755955-26756023,
26756565-26756720,26756885-26756985,26757068-26757215,
26757540-26757702,26757833-26757965,26758049-26758226,
26758330-26758572,26758664-26758732,26759063-26759187,
26759727-26759766,26760756-26760812,26762831-26762935
Length = 1004
Score = 29.1 bits (62), Expect = 4.1
Identities = 18/66 (27%), Positives = 36/66 (54%)
Frame = +2
Query: 242 QGRSSGERLADDVIAVANPSRVRVLRILREGAWPQTYGQSKTIRTSKYSRRLQHGSDYLQ 421
Q S GE+ + I + N S+ + ++ EG+ PQ + + T ++K + HG+ + +
Sbjct: 735 QALSVGEKFLELDILMENSSQETPVYVITEGSEPQFFTRFFTWDSAKSA---MHGNSFER 791
Query: 422 RLDILR 439
RL I++
Sbjct: 792 RLSIVK 797
>06_01_0173 -
1364219-1364836,1364941-1365123,1365215-1365470,
1365551-1366120,1367066-1367178,1367344-1367816,
1367906-1367984
Length = 763
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +3
Query: 387 LVVYNMAQTIFSAWIFYEYLMSGWWGHYDFRCQLVDYSRSPMAMRMANT 533
+++ N+A TIF+ + E L WWG C + + P+ + A T
Sbjct: 448 ILIANIAVTIFACEYYIEQLQLPWWGVL-LACAIAFFFTLPIGIITATT 495
>01_05_0508 - 22804809-22805231,22805775-22806797
Length = 481
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = -3
Query: 770 RTHGSHHVVKVHYDVNERVEQSEESAVTTRREFKSEPNRHRHDPVMYH 627
R H S +V ++YD E+ E+ E R+ EP + P H
Sbjct: 416 RRHRSINVGDLYYDPREQEEEEESPTARLHRKLYFEPTGDQESPYTKH 463
>07_01_0441 + 3345616-3346149
Length = 177
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = -3
Query: 554 AEVVPPT---RVRHPHGHWTPRVIYQLTPKVIVAPPSAHQILVE 432
AE PT RV G P ++Y+LTP+V+ A P + +V+
Sbjct: 34 AEASRPTKKPRVVAGGGDMGPVIVYELTPRVVHAQPEEFRAIVQ 77
>06_03_0992 -
26680555-26680840,26680893-26681279,26681364-26682441,
26682537-26683083
Length = 765
Score = 28.7 bits (61), Expect = 5.4
Identities = 9/39 (23%), Positives = 20/39 (51%)
Frame = +3
Query: 519 RMANTCWWYYFSKFTEFMDTLFFVLRKKNEHVSTLHVIH 635
++ N WW +F D ++F++R + LH+++
Sbjct: 447 KVLNDVWWDKVQYILDFTDPIYFMIRAADTDKPCLHLVY 485
>05_04_0183 - 18849749-18850225,18850305-18850431,18851762-18853515
Length = 785
Score = 28.7 bits (61), Expect = 5.4
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Frame = -3
Query: 515 GHWTPRVIYQLTPKVIVAPPSAHQ--ILVEYPGAEDSLSHVVNDENISKF--EWFS 360
G+W R+++++ V PP+ ++ + YP AE+ H VN + KF EW S
Sbjct: 378 GYWAQRILWEIGGYVAFYPPTIYRKDHIQAYPFAEEKDLH-VNVGRLIKFLNEWRS 432
>12_01_0811 -
7440413-7440712,7441285-7441398,7441448-7441705,
7441825-7441998,7442344-7442514,7442607-7442874,
7443171-7443937,7444437-7445123
Length = 912
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = +3
Query: 423 AWIFYEYLMSGWWGHYDFRCQLVDYSRSPMAMRMANTCW 539
+WIF + S WW + Q + S PM A C+
Sbjct: 561 SWIFSRIVESIWWQAFTPHMQSANISSEPMPSSNAKKCY 599
>07_03_1539 + 27567397-27568985,27569153-27569279,27569361-27569837
Length = 730
Score = 28.3 bits (60), Expect = 7.2
Identities = 7/25 (28%), Positives = 19/25 (76%)
Frame = -3
Query: 515 GHWTPRVIYQLTPKVIVAPPSAHQI 441
G+W+ R+++++ ++V PP+ H++
Sbjct: 323 GYWSQRILWEIGGYLVVYPPTVHRM 347
>06_01_0824 -
6219477-6219556,6220427-6220808,6221415-6221448,
6222214-6222370,6224449-6224575,6224663-6224914
Length = 343
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/36 (30%), Positives = 16/36 (44%)
Frame = -3
Query: 563 CELAEVVPPTRVRHPHGHWTPRVIYQLTPKVIVAPP 456
C +A + PP + P G +P +Q P PP
Sbjct: 111 CNIASLGPPRPAQPPRGRASPGAQFQAPPPAFQGPP 146
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,828,472
Number of Sequences: 37544
Number of extensions: 467771
Number of successful extensions: 1287
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1287
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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