Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30p09
         (766 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   1.7  
SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomy...    26   5.1  
SPCC16A11.01 ||SPCC63.15|conserved fungal protein|Schizosaccharo...    26   6.8  
SPCC965.08c |alr1||alanine racemase Alr1|Schizosaccharomyces pom...    26   6.8  
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe...    25   9.0  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    25   9.0  
SPCC4B3.18 |||phosphopantothenate-cysteine ligase|Schizosaccharo...    25   9.0  

>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -3

Query: 125 QH*DKHSTLRNKFSQNFSWIKSKLYFNENKIKNIFIQQHE 6
           +H    S   N+ + NFS I S LY  ++  KN+  +Q +
Sbjct: 340 RHNSSQSFYGNRSTTNFSIINSGLYLKKDAAKNLLAKQFD 379


>SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 538

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 7/22 (31%), Positives = 16/22 (72%)
 Frame = -3

Query: 74  SWIKSKLYFNENKIKNIFIQQH 9
           SW++S+ + N+N++ N  + +H
Sbjct: 161 SWLQSRAHKNQNQVTNSVVNEH 182


>SPCC16A11.01 ||SPCC63.15|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 328

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 238 GNSLRFPWMLAMLWTELYHEVLCV 309
           G S RF W++  LW+ +Y  +LC+
Sbjct: 205 GRSARFEWVVCFLWS-IYICLLCL 227


>SPCC965.08c |alr1||alanine racemase Alr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 375

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 18/60 (30%), Positives = 28/60 (46%)
 Frame = -1

Query: 556 PSIFLKLYILVQHNSQPIQQPCLVHIAVISILELYHSTI*LYDY*FETTDHRHLTNPMKS 377
           PS F+K Y L+ +N        + H A   +LE    T+  +D  FE +   HL  P+ +
Sbjct: 143 PSQFMKFYNLLSNNKNVSNIGKITHFAFADMLENPEHTLKQWDI-FEKS-VAHLPGPLSA 200


>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 133 IIISTRTNIPLYEINSHK 80
           +++S + N PLY +N HK
Sbjct: 229 VMVSRKENSPLYTVNRHK 246


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1315

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = +2

Query: 185 QLSFYSVGVQISIRAI 232
           +LSF+S G+QIS++ I
Sbjct: 167 ELSFFSTGIQISVQGI 182


>SPCC4B3.18 |||phosphopantothenate-cysteine
           ligase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 316

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 112 NIPLYEINSHKISHGSNQNYISMK 41
           +IP  E++ HKI  GS  N + +K
Sbjct: 185 HIPPKELSEHKIQSGSGSNKLEVK 208


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,167,242
Number of Sequences: 5004
Number of extensions: 64369
Number of successful extensions: 167
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)