Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30p09
         (766 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           27   0.19 
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    23   2.4  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   2.4  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   5.4  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   7.2  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 27.1 bits (57), Expect = 0.19
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -1

Query: 130 IISTRTNIPLYEINSHKISHGSNQNYISMKTKLKIFLYSNMKS 2
           +I T +N+ L   N  K+ H  +QN   +  KL ++LY ++ S
Sbjct: 473 VIGT-SNLSLVFPNDIKVDHEYDQNVWVLSNKLAMYLYGSIDS 514


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = -1

Query: 130 IISTRTNIPLYEINSHKISHGSNQNYISMKTKLKIFLYSN 11
           IIS+ +N  ++  N++K ++ +  NY +     K++ Y N
Sbjct: 81  IISSLSNKTIHNNNNYKYNYNNKYNYNNNNYNKKLY-YKN 119



 Score = 23.0 bits (47), Expect = 3.1
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = -3

Query: 206 QRNRS*VALSYNTKPLII*SQIAMNYHQH*DKHSTLRNKFSQNFSWIKSKLYFNENKIKN 27
           +R+R       + +P II S      H + +      NK++ N +    KLY+ +N I N
Sbjct: 65  ERSRDRTERERSREPKIISSLSNKTIHNNNNYKYNYNNKYNYNNNNYNKKLYY-KNYIIN 123

Query: 26  I 24
           I
Sbjct: 124 I 124


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = -1

Query: 610 WFYYFSSILAGLFLILKAPSIF 545
           W +  + +L  + +IL+APS++
Sbjct: 552 WIFTVACVLGTVLIILQAPSLY 573


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 412 WFQISNHITILLNGIILEWRS 474
           +F I N I + L GII+ W S
Sbjct: 267 FFMILNEIIMKLVGIIIMWYS 287


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = -3

Query: 134 NYHQH*DKHSTLRNKFSQNFSWIKSKLYFNENKIKNI 24
           NY  + + ++   N ++ N++    KLY+N   I+ I
Sbjct: 328 NYKYNYNNNNYNNNNYNNNYNNNCKKLYYNIINIEQI 364


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,929
Number of Sequences: 438
Number of extensions: 4759
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)