Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte30p07
(748 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1604.05 |pgi1||glucose-6-phosphate isomerase |Schizosaccharo... 30 0.40
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 28 1.6
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch... 28 1.6
SPAC10F6.06 |vip1||RNA-binding protein Vip1|Schizosaccharomyces ... 27 2.8
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 27 2.8
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ... 27 3.8
SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces pombe... 26 5.0
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p... 26 5.0
SPAC2E1P5.01c |mns1|SPAPB1E7.13c|mannosyl-oligosaccharide 1,2-al... 26 6.6
SPAC212.08c |||GPI anchored protein |Schizosaccharomyces pombe|c... 26 6.6
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa... 26 6.6
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual 25 8.7
SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|c... 25 8.7
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 25 8.7
>SPBC1604.05 |pgi1||glucose-6-phosphate isomerase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 29.9 bits (64), Expect = 0.40
Identities = 23/77 (29%), Positives = 32/77 (41%)
Frame = +3
Query: 432 KTNNTFHELKNSRNPVILYCHGTAVAANFVSNLEELCQERGSEKLRLPDALVLEAPFNNL 611
K + TF+ LK P++ + V L +L +E E LR DAL N
Sbjct: 41 KFSFTFNGLKEEDGPILFDFSKNLITEETVELLVKLAKEANVEGLR--DALFAGEHINFT 98
Query: 612 KDEIAKHPLSKLVSWLP 662
+D HP + VS P
Sbjct: 99 EDRAVFHPALRNVSEKP 115
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 27.9 bits (59), Expect = 1.6
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +3
Query: 264 CINFPRNLNYDSPSSCSVTCGRNLNIEFRSIVDN 365
CI RNLNY+ SC V + +E S+ D+
Sbjct: 631 CIKKRRNLNYNENLSCKVDLDKKKMLETLSLSDS 664
>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 27.9 bits (59), Expect = 1.6
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -1
Query: 376 LMRKLSTIERNSMLRFLPHVTLQLDGLS*FKFLG 275
LM + ++++ M +P +TL +DGLS F LG
Sbjct: 98 LMLTTNLLKKDLMSSKVPEITLAIDGLSHFSTLG 131
>SPAC10F6.06 |vip1||RNA-binding protein Vip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 257
Score = 27.1 bits (57), Expect = 2.8
Identities = 16/72 (22%), Positives = 35/72 (48%)
Frame = -3
Query: 599 GSLQDQRIRKPQFL*ASLLTQLFQVGYEICRDSSSMTIQYDRIPAILKLMKGIIGFEISD 420
G+ DQ R+ ++++++L GY + + +IQ D+ + KGI+ +S
Sbjct: 86 GAGGDQAARQEDKPRSAIISELLSRGYHLSDVTLEKSIQLDQSYGVSSKFKGILESALSG 145
Query: 419 VLNFRVRQYMPD 384
V + R ++ +
Sbjct: 146 VRSVNERYHVTE 157
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 27.1 bits (57), Expect = 2.8
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +3
Query: 273 FPRNLNYDSPSSCSVTCGRNLNIEFRSIVDNFLIRLGIWHILPN 404
F N++ S CS+ NL+ + R ++ N+ R+G HIL N
Sbjct: 1775 FSENIHTLYFSCCSMIAKENLDDQLRELLKNYFNRVG--HILLN 1816
>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 846
Score = 26.6 bits (56), Expect = 3.8
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +3
Query: 621 IAKHPLSKLVSWLPYFKNTFVKPFTDSPDYSFTTDEYL 734
IA PLS +L Y KN F+ F + S +TD+ L
Sbjct: 645 IAMSPLSNNALFLAYDKNPFLTYFKRGLNVSLSTDDPL 682
>SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 590
Score = 26.2 bits (55), Expect = 5.0
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +3
Query: 498 TAVAANFVSNLEELCQERGSEKLRLPDALVLEAPFNNLKDEIAKHPL 638
T V+ F+ L+ +E+ EK+ D + F LKDE PL
Sbjct: 465 TKVSKTFLKKLDAFHEEKLREKINSSDKGDVSYEFELLKDETVFSPL 511
>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1098
Score = 26.2 bits (55), Expect = 5.0
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +3
Query: 627 KHPLSKLVSWLPYFKNTFVKPFTDSPDYSF-TTDEYLAVV 743
K L + SWL F + F + F D + F TDEY +V+
Sbjct: 1042 KRELKMVYSWLQLFYD-FFRNFQDIAPFDFLNTDEYKSVM 1080
>SPAC2E1P5.01c |mns1|SPAPB1E7.13c|mannosyl-oligosaccharide
1,2-alpha-mannosidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 521
Score = 25.8 bits (54), Expect = 6.6
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +3
Query: 669 KNTFVKPFTDSPDYSFTTDEYLAVV 743
K TF++ +TD Y + DEY ++
Sbjct: 51 KKTFIESWTDYETYGWGKDEYYPII 75
>SPAC212.08c |||GPI anchored protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 278
Score = 25.8 bits (54), Expect = 6.6
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -3
Query: 260 REYHFPLDRFIVSEHQGQHGN 198
R Y +P D F+VS + Q GN
Sbjct: 192 RSYFYPQDSFLVSHAEWQDGN 212
>SPAC19A8.08 |upf2||nonsense-mediated decay protein
Upf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1049
Score = 25.8 bits (54), Expect = 6.6
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +3
Query: 408 EIKDVADLKTNNTFHELKNSRNPVILYCHGTAVAANFVSNLEELCQERGS 557
E+ D + T EL N NPV+ + ++V LE CQ+R S
Sbjct: 242 ELFTTEDFEDKETL-ELVNRLNPVVWRTYLRKSLNSYVDKLEVYCQKRKS 290
>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1029
Score = 25.4 bits (53), Expect = 8.7
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 630 HPLSKLVSWLP-YFKNTFVKPFTDSPDYSFTTDEYLAVV 743
H L+ S L +NTFVK ++ D S T D++ ++V
Sbjct: 578 HELTPFASQLAKQLRNTFVKLMQETMDESTTVDDFDSLV 616
>SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 438
Score = 25.4 bits (53), Expect = 8.7
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +3
Query: 447 FHELKNSRNPVILYCHGTAVAANFVSNL 530
FH N + PV ++ HG + N S+L
Sbjct: 108 FHPPNNGKLPVFIFSHGLVGSRNVYSSL 135
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 25.4 bits (53), Expect = 8.7
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Frame = +1
Query: 277 RET*TTIARLVAAL---HAGETSTLSSVRSWTI 366
R + TTI R A++ H G+TSTLS RS +I
Sbjct: 309 RSSRTTIRRTGASIRTIHRGKTSTLSGNRSHSI 341
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,786,836
Number of Sequences: 5004
Number of extensions: 57691
Number of successful extensions: 200
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -