Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30p05
         (782 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36B7.07 |tlg1||SNARE Tgl1|Schizosaccharomyces pombe|chr 2|||...    44   3e-05
SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Sc...    31   0.14 
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    29   0.75 
SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei...    29   0.99 
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo...    27   2.3  
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc...    27   4.0  
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch...    27   4.0  
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    27   4.0  
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M...    26   5.3  
SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomy...    26   5.3  
SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces pombe...    25   9.3  

>SPBC36B7.07 |tlg1||SNARE Tgl1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 225

 Score = 43.6 bits (98), Expect = 3e-05
 Identities = 21/60 (35%), Positives = 34/60 (56%)
 Frame = +3

Query: 504 STELKNALRSIEWDLEDLEDTISIVEKNSSKFKIDNKEICDRRTFIEATKQEVKNMKSKM 683
           +TEL  A+  +   L+DL+  + I  KNS  F +D +E+  RR F+     E+ N++ KM
Sbjct: 38  NTELTYAIDELSETLKDLKAAVEIAMKNSEHFGLDEEELKSRRRFVSELDIELNNIQLKM 97


>SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 765

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 218 LLPPRCLPSFRVQFWFCHFFYSRTCIAAQY 129
           +L P C    R +FW C F + R  + AQY
Sbjct: 63  VLNPYCHVDLRARFWICPFCFQRNPLPAQY 92


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 29.1 bits (62), Expect = 0.75
 Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
 Frame = +3

Query: 531  SIEWDLEDLEDTISIVEKNSSKFKIDNKEICDRRTF-IEATKQEVKNMKSKMSLNRNRDN 707
            S+  D  DL+DT  ++EKN+S F ID + I  R    I     +++  + K+ L + +  
Sbjct: 1186 SLNADNLDLKDTNGVLEKNASDF-IDFQGIKSRYEHKISDLLNQLQKERCKVGLLKQKTE 1244

Query: 708  DGTAREPLLGDDSP 749
            + +  +  L  +SP
Sbjct: 1245 NRSVTQHTLDGNSP 1258


>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
           Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 28.7 bits (61), Expect = 0.99
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -1

Query: 218 LLPPRCLPSFRVQFWFCHFFYSRTCIAAQYIAVCN 114
           +L P C    R +FW C F   R  +  QY  + N
Sbjct: 63  VLNPYCHIDTRAKFWICPFCLQRNMLPPQYKDISN 97


>SPBC18A7.02c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 200 LPSFRVQFWFCHFFYSRTCIAAQYI 126
           + S  +  WFC FF+   CI+A YI
Sbjct: 304 IQSIHLGLWFC-FFFLTACISALYI 327


>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1233

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = +3

Query: 540 WDLEDLEDTISIVEKNSSKFKIDNKEICDRRTFIEATKQEVKNMKSKMSLNRN 698
           W L  LE +IS      ++ K D+ ++ +RR   E TK+  K  + + S+ RN
Sbjct: 236 WKLFHLEKSISSNMAEVTRLKADSIQLIERRD--ENTKEIEKLKEKEGSIRRN 286


>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 870

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 19/79 (24%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
 Frame = +3

Query: 519 NALRSIEWDLEDLEDTI----SIVEKNSSKFKIDNKEICDRRTFIEATKQEVKNMKSKMS 686
           N + S   D++ L  +I     IV + + +F++   E  +RR +IE + +E+++  ++++
Sbjct: 439 NLIHSSLTDIDALRPSIIQLQDIVTEANKEFQLLRAEREERRRYIETSSRELEDKDAEIA 498

Query: 687 LNRNR---DNDGTAREPLL 734
               +   D D +A++ LL
Sbjct: 499 AQAYKAKVDQDTSAKQGLL 517


>SPAC23C4.19 |spt5||transcription elongation factor
            Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 9/31 (29%), Positives = 13/31 (41%)
 Frame = +3

Query: 462  KTPIIASSPEVEWTSTELKNALRSIEWDLED 554
            +TP++A+     W  T          WD ED
Sbjct: 924  QTPMVANGTNTSWGQTPAYGGFSETNWDTED 954


>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 468

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 19/73 (26%), Positives = 36/73 (49%)
 Frame = +3

Query: 513 LKNALRSIEWDLEDLEDTISIVEKNSSKFKIDNKEICDRRTFIEATKQEVKNMKSKMSLN 692
           L+ ++ +I  +L +L D ++    +S   K+ +K +  R    E  KQ+    K +  L 
Sbjct: 153 LQTSIDTIRNELNELRDQLN----DSESKKLSDKFVEIRSELDEVRKQQDGYYKDQRKLI 208

Query: 693 RNRDNDGTAREPL 731
             RD++ TA + L
Sbjct: 209 AERDDEKTALDDL 221


>SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 505

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
 Frame = +3

Query: 432 GLYLRWQEICKTPIIASSP---EVEWTSTE 512
           GLYL W+   KT +++SS    E +W S E
Sbjct: 471 GLYLIWKIYKKTKLVSSSEADLETDWKSLE 500


>SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 511

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = -2

Query: 670 MFLTSCFVASIKVRLSQISLLSILNFEEFFSTILI 566
           MF+ S +    K+RL+++S + I+N    F+ I++
Sbjct: 461 MFMASSYDVVNKIRLNEMSPMLIMNISVAFTCIVM 495


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,057,615
Number of Sequences: 5004
Number of extensions: 59681
Number of successful extensions: 183
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)