Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30o24
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual     30   0.36 
SPAC15A10.06 |||CPA1 sodium ion/proton antiporter|Schizosaccharo...    26   5.8  
SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1 |Schi...    26   5.8  
SPCC16C4.19 ||SPCC5E4.08|RNase MRP|Schizosaccharomyces pombe|chr...    26   5.8  

>SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 6/100 (6%)
 Frame = +2

Query: 398 LRRPGTWLTAQQKKSKSEPGPLKKWWNSLRDNEKVF----YPI-LAANLLVFGAWRIRAL 562
           +R P  ++    K  K         WN   D  K +    YP  + A   +  A +++ L
Sbjct: 143 VRHPHNYMVKFAKSLKFSSSTASIAWNVCTDAYKTYTMLKYPAHIVAVASISIACKLQQL 202

Query: 563 -QPFMVKYFCSNPSGGAVCLPMVLSTFSHYSPLHLAANMY 679
            QP + + F + P+     +  +L  + HY P     NMY
Sbjct: 203 PQPIIPRSFFAPPALTEAVIADILDLYMHYQPHTCIGNMY 242


>SPAC15A10.06 |||CPA1 sodium ion/proton
           antiporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 106 KHYLLYFNSNITLFISDKYIFNVLVDIN 23
           KHY  +FN +    +S KY+F VL  ++
Sbjct: 301 KHYA-FFNMSYKAKLSTKYVFRVLAQLS 327


>SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +2

Query: 554 RALQPFMVKYFCSNPSGGAVCLPMVLSTFSHYSPL 658
           R L   +   FC +P    VC+P+ +     ++PL
Sbjct: 338 RHLNHLLKSPFCVHPGTSRVCVPIDIERMDSFNPL 372


>SPCC16C4.19 ||SPCC5E4.08|RNase MRP|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 184

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 260 DFPKGQVSELAANLFLNC 207
           D  KG+VS L  NL +NC
Sbjct: 79  DLKKGEVSRLGTNLEINC 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,872,770
Number of Sequences: 5004
Number of extensions: 61578
Number of successful extensions: 144
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)