Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30o24
         (685 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC014058-1|AAH14058.1|  379|Homo sapiens presenilin associated, ...   130   5e-30
AF197937-1|AAG28519.1|  379|Homo sapiens presenilins associated ...   130   5e-30
BC003653-1|AAH03653.1|  329|Homo sapiens presenilin associated, ...    92   1e-18
AK074611-1|BAC11088.1|  669|Homo sapiens protein ( Homo sapiens ...    30   8.8  

>BC014058-1|AAH14058.1|  379|Homo sapiens presenilin associated,
           rhomboid-like protein.
          Length = 379

 Score =  130 bits (314), Expect = 5e-30
 Identities = 64/155 (41%), Positives = 92/155 (59%), Gaps = 2/155 (1%)
 Frame = +2

Query: 227 RQALKPDPLENLHIETGPLHAKGLVKPLIFTVGVSAASLLGCVIWEYENLRVHASSLLRR 406
           R AL P P+E       P   + L+KPL FTVG +  +     IW+YE+L+    S    
Sbjct: 76  RSALIP-PVEETVFYPSPYPIRSLIKPLFFTVGFTGCAFGSAAIWQYESLKSRVQSYFDG 134

Query: 407 -PGTWLTAQQKKSKSE-PGPLKKWWNSLRDNEKVFYPILAANLLVFGAWRIRALQPFMVK 580
               WL + + + + +    + KWWN+L D ++    I+AAN+LVF  WR+ +LQ  M++
Sbjct: 135 IKADWLDSIRPQKEGDFRKEINKWWNNLSDGQRTVTGIIAANVLVFCLWRVPSLQRTMIR 194

Query: 581 YFCSNPSGGAVCLPMVLSTFSHYSPLHLAANMYVL 685
           YF SNP+   +C PM+LSTFSH+S  H+AANMYVL
Sbjct: 195 YFTSNPASKVLCSPMLLSTFSHFSLFHMAANMYVL 229


>AF197937-1|AAG28519.1|  379|Homo sapiens presenilins associated
           rhomboid-like protein protein.
          Length = 379

 Score =  130 bits (314), Expect = 5e-30
 Identities = 64/155 (41%), Positives = 92/155 (59%), Gaps = 2/155 (1%)
 Frame = +2

Query: 227 RQALKPDPLENLHIETGPLHAKGLVKPLIFTVGVSAASLLGCVIWEYENLRVHASSLLRR 406
           R AL P P+E       P   + L+KPL FTVG +  +     IW+YE+L+    S    
Sbjct: 76  RSALIP-PVEETVFYPSPYPIRSLIKPLFFTVGFTGCAFGSAAIWQYESLKSRVQSYFDG 134

Query: 407 -PGTWLTAQQKKSKSE-PGPLKKWWNSLRDNEKVFYPILAANLLVFGAWRIRALQPFMVK 580
               WL + + + + +    + KWWN+L D ++    I+AAN+LVF  WR+ +LQ  M++
Sbjct: 135 IKADWLDSIRPQKEGDFRKEINKWWNNLSDGQRTVTGIIAANVLVFCLWRVPSLQRTMIR 194

Query: 581 YFCSNPSGGAVCLPMVLSTFSHYSPLHLAANMYVL 685
           YF SNP+   +C PM+LSTFSH+S  H+AANMYVL
Sbjct: 195 YFTSNPASKVLCSPMLLSTFSHFSLFHMAANMYVL 229


>BC003653-1|AAH03653.1|  329|Homo sapiens presenilin associated,
           rhomboid-like protein.
          Length = 329

 Score = 92.3 bits (219), Expect = 1e-18
 Identities = 46/131 (35%), Positives = 71/131 (54%), Gaps = 2/131 (1%)
 Frame = +2

Query: 227 RQALKPDPLENLHIETGPLHAKGLVKPLIFTVGVSAASLLGCVIWEYENLRVHASSLLRR 406
           R AL P P+E       P   + L+KPL FTVG +  +     IW+YE+L+    S    
Sbjct: 76  RSALIP-PVEETVFYPSPYPIRSLIKPLFFTVGFTGCAFGSAAIWQYESLKSRVQSYFDG 134

Query: 407 -PGTWLTAQQKKSKSE-PGPLKKWWNSLRDNEKVFYPILAANLLVFGAWRIRALQPFMVK 580
               WL + + + + +    + KWWN+L D ++    I+AAN+LVF  WR+ +LQ  M++
Sbjct: 135 IKADWLDSIRPQKEGDFRKEINKWWNNLSDGQRTVTGIIAANVLVFCLWRVPSLQRTMIR 194

Query: 581 YFCSNPSGGAV 613
           YF SNP+   +
Sbjct: 195 YFTSNPASSVI 205


>AK074611-1|BAC11088.1|  669|Homo sapiens protein ( Homo sapiens
           cDNA FLJ90130 fis, clone HEMBB1000407. ).
          Length = 669

 Score = 29.9 bits (64), Expect = 8.8
 Identities = 28/90 (31%), Positives = 37/90 (41%), Gaps = 8/90 (8%)
 Frame = -2

Query: 609 APPEGLEQKYL---TIKGCRALMRHAPNTSKLAAKI-----G*NTFSLSRSEFHHFFNGP 454
           AP    E K L   TI  CR+L+++ P T  L A I           LS    +H F   
Sbjct: 43  APTSSSELKLLEEATISVCRSLVKNNPRTGNLGALIKVFLSRTKELKLSAECQNHIFIWQ 102

Query: 453 GSDLLFFCCAVSHVPGLRSSEEA*TRRFSY 364
             + LF  C +  V   + SEE     F+Y
Sbjct: 103 THNALFIICCLLKVFICQMSEEELQLHFTY 132


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,849,796
Number of Sequences: 237096
Number of extensions: 2340689
Number of successful extensions: 4263
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4260
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7783251346
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)