Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30o24
         (685 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024810-14|AAF60768.2|  165|Caenorhabditis elegans Rhomboid (dr...    32   0.33 
U23518-1|AAC70883.1|  124|Caenorhabditis elegans Hypothetical pr...    30   1.8  
AF039710-2|AAB96690.1|  419|Caenorhabditis elegans Hypothetical ...    27   9.4  

>AC024810-14|AAF60768.2|  165|Caenorhabditis elegans Rhomboid
           (drosophila) related protein5 protein.
          Length = 165

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 14/21 (66%), Positives = 16/21 (76%)
 Frame = +2

Query: 623 MVLSTFSHYSPLHLAANMYVL 685
           M+LS FSH S +HL  NMYVL
Sbjct: 1   MLLSAFSHSSIIHLGLNMYVL 21


>U23518-1|AAC70883.1|  124|Caenorhabditis elegans Hypothetical
           protein F21D12.2 protein.
          Length = 124

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = +2

Query: 113 TLNVSANICKPPLFNQVWLPPKNGRLIRNSFHNSKRGSRQALKPDPLENLHIETG 277
           T+ +   I K  LF   +  P     +   F++SKR  +   +PD LEN  +E G
Sbjct: 9   TIKLIRRIRKCLLFFMPFFMPTYAYYLSAFFYSSKRRKKNDFRPDCLENTVVEQG 63


>AF039710-2|AAB96690.1|  419|Caenorhabditis elegans Hypothetical
           protein C46E10.5 protein.
          Length = 419

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/27 (59%), Positives = 18/27 (66%)
 Frame = -3

Query: 410 LVFVVVKKREPVDSHIPILHSLVNWLL 330
           L F+ VKKRE +  HIP L S VN LL
Sbjct: 25  LKFLSVKKREQIHIHIPELRS-VNALL 50


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,888,007
Number of Sequences: 27780
Number of extensions: 349158
Number of successful extensions: 897
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)