Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30o21
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    28   1.6  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    28   1.6  
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch...    28   1.6  
SPAC10F6.06 |vip1||RNA-binding protein Vip1|Schizosaccharomyces ...    27   2.7  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    27   2.7  
SPAC212.08c |||GPI anchored protein |Schizosaccharomyces pombe|c...    26   6.3  
SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|c...    25   8.4  
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    25   8.4  

>SPAC19A8.08 |upf2||nonsense-mediated decay protein
           Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 7/100 (7%)
 Frame = +3

Query: 408 EIKDVADLKTNNTFHELKNSRNPVILYCHGTAVAANFVSNLEELCQERGS--EKL--RLP 575
           E+    D +   T  EL N  NPV+   +      ++V  LE  CQ+R S  E+L  +  
Sbjct: 242 ELFTTEDFEDKETL-ELVNRLNPVVWRTYLRKSLNSYVDKLEVYCQKRKSLFEELNKQYQ 300

Query: 576 DALVLEAPFNNLK-DEIAKTS-SIETGFLA-ALLQEYVRK 686
           +  ++ A  NN K   +A  S SIE+ F + A L E + +
Sbjct: 301 EQSIIRADPNNEKFQRLANFSKSIESEFSSYASLSEVLNR 340


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 264 CINFPRNLNYDSPSSCSVTCGRNLNIEFRSIVDN 365
           CI   RNLNY+   SC V   +   +E  S+ D+
Sbjct: 631 CIKKRRNLNYNENLSCKVDLDKKKMLETLSLSDS 664


>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -2

Query: 376 LMRKLSTIERNSMLRFLPHVTLQLDGLS*FKFLG 275
           LM   + ++++ M   +P +TL +DGLS F  LG
Sbjct: 98  LMLTTNLLKKDLMSSKVPEITLAIDGLSHFSTLG 131


>SPAC10F6.06 |vip1||RNA-binding protein Vip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 257

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 16/72 (22%), Positives = 35/72 (48%)
 Frame = -1

Query: 599 GSLQDQRIRKPQFL*ASLLTQLFQVGYEICRDSSSMTIQYDRIPAILKLMKGIIGFEISD 420
           G+  DQ  R+     ++++++L   GY +   +   +IQ D+   +    KGI+   +S 
Sbjct: 86  GAGGDQAARQEDKPRSAIISELLSRGYHLSDVTLEKSIQLDQSYGVSSKFKGILESALSG 145

Query: 419 VLNFRVRQYMPD 384
           V +   R ++ +
Sbjct: 146 VRSVNERYHVTE 157


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1822

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +3

Query: 273  FPRNLNYDSPSSCSVTCGRNLNIEFRSIVDNFLIRLGIWHILPN 404
            F  N++    S CS+    NL+ + R ++ N+  R+G  HIL N
Sbjct: 1775 FSENIHTLYFSCCSMIAKENLDDQLRELLKNYFNRVG--HILLN 1816


>SPAC212.08c |||GPI anchored protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 278

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 260 REYHFPLDRFIVSEHQGQHGN 198
           R Y +P D F+VS  + Q GN
Sbjct: 192 RSYFYPQDSFLVSHAEWQDGN 212


>SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 438

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 447 FHELKNSRNPVILYCHGTAVAANFVSNL 530
           FH   N + PV ++ HG   + N  S+L
Sbjct: 108 FHPPNNGKLPVFIFSHGLVGSRNVYSSL 135


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
 Frame = +1

Query: 277 RET*TTIARLVAAL---HAGETSTLSSVRSWTI 366
           R + TTI R  A++   H G+TSTLS  RS +I
Sbjct: 309 RSSRTTIRRTGASIRTIHRGKTSTLSGNRSHSI 341


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,694,846
Number of Sequences: 5004
Number of extensions: 55217
Number of successful extensions: 189
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)