Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30o15
         (675 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr...    26   5.7  
SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyc...    26   5.7  
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ...    26   5.7  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     25   7.6  
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           25   7.6  
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    25   10.0 
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ...    25   10.0 
SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|...    25   10.0 

>SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 319

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 454 SQSRHNGKPRTRSRVSIMNYGIRNRR 377
           SQ R NG+ + R  V ++NY I + R
Sbjct: 271 SQPRINGREKLRRSVKVINYAIPSLR 296


>SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +2

Query: 326 LLKCLSTHLHVMKHFYNPTISYSIIHYRNTRTRA 427
           LL+C+++H     HF N  I+  +  + NT +++
Sbjct: 88  LLQCIASHPETRIHFLNAHITLFLYPFLNTLSKS 121


>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
           Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 879

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +1

Query: 94  ILKLSGKTLFQQWVTRSKLPWTISSLSSASYLRTKEMVL 210
           +L  +G+TL+ Q V  +K   +I S S  SYL   +++L
Sbjct: 531 LLNAAGQTLYTQDVHTTKGTLSIESFSRLSYLLEVQILL 569


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 115 TLFQQWVTRSKLPWTISSLSSASYLR 192
           +L    VT S L WT +S+S   YLR
Sbjct: 334 SLLAAGVTNSLLEWTNTSVSDKEYLR 359


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 17/87 (19%), Positives = 39/87 (44%)
 Frame = -3

Query: 463 LVASQSRHNGKPRTRSRVSIMNYGIRNRRIIEMLHYVKMRGETFQQK*RFLYLLKITPVS 284
           L + + + N K      ++++       ++ E++  + +RG+ F+    F+  +K     
Sbjct: 37  LASKRKKLNEKKENLEDLTLLKTSAFELKLNELIREISVRGKYFRHANTFVEKIKDLIFK 96

Query: 283 IVVILRSSKTFACLNQKSDWYNVIVVP 203
             VI  ++   AC N + D    ++VP
Sbjct: 97  TPVIPETNFWSACKNLEKD--KKVIVP 121


>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = +3

Query: 120 ISTMGDEEQATLDNQFIEFSKLFENKRDGTTITLYQSDFWFRQAKVLD 263
           I+ MG     +L + +  F+K  EN  +G  +       W+R+A + D
Sbjct: 19  IAKMGTLTADSLGSMWNVFTKCAENLENGRRLENISWRLWYREAMMSD 66


>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 391

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = +1

Query: 25  NYLYMYFIKIFLIIFGDQHNQ*YI-LKLSGKTLFQQWVTRSKLPWTISSLSSASYLRTK 198
           +Y   +F +  L++ G +HN   I    SG  L    + RS   W I+SLS      TK
Sbjct: 84  DYHSPWFRQETLVLEGHEHNIPCITFNSSGTLLLSGSIDRSLQIWDITSLSCLCKFYTK 142


>SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 539

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 164 LIVQGSLLLVTHC*NKVLPLNFKMYYWLCWSP 69
           L VQG    VT+    V+P+N  + Y   WSP
Sbjct: 240 LQVQGIFHPVTYILAIVVPINIFLNYLFVWSP 271


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,799,281
Number of Sequences: 5004
Number of extensions: 56710
Number of successful extensions: 155
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)