Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30o15
         (675 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0247 - 21669299-21669348,21669673-21670012,21670110-216701...    31   0.64 
02_05_0190 - 26592452-26592693,26592911-26593004,26593425-265936...    29   3.4  
04_04_0165 + 23247265-23247472,23248115-23248407,23249182-232492...    28   5.9  
07_03_1342 - 25891761-25892102,25892588-25893135,25893342-258950...    28   7.8  

>11_06_0247 -
           21669299-21669348,21669673-21670012,21670110-21670199,
           21670280-21670339,21670564-21670856,21671176-21671245,
           21671623-21671970,21673188-21673318,21673418-21673901,
           21674839-21675558
          Length = 861

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +2

Query: 341 STHLHVMKHFYNPTISYSIIHYRNTRTRAWLAIVPALTRD*IP 469
           S HLH+  H ++P   + ++H   T    WL+  P   R  +P
Sbjct: 11  SIHLHLHLHLHHPPRLHRLLHLSTTSPYPWLSAWPTAHRRRVP 53


>02_05_0190 -
           26592452-26592693,26592911-26593004,26593425-26593656,
           26594660-26595066
          Length = 324

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/44 (40%), Positives = 21/44 (47%)
 Frame = -3

Query: 547 RVATRIVIHSLYAYPASQASGRSIRSRYLVASQSRHNGKPRTRS 416
           RVATR V  S          G S  +   VA+ S   G+PRTRS
Sbjct: 11  RVATRAVRSSSALGSGGGGGGASTSATSPVAASSSSGGRPRTRS 54


>04_04_0165 +
           23247265-23247472,23248115-23248407,23249182-23249239,
           23249302-23250014
          Length = 423

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -2

Query: 410 FDNELWNTKSSDYRNASLREDAWRD 336
           F+N LWNT  S  R   LRE+A  D
Sbjct: 309 FENGLWNTGGSCNRTEPLREEAMID 333


>07_03_1342 -
           25891761-25892102,25892588-25893135,25893342-25895012,
           25895818-25896745
          Length = 1162

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +1

Query: 562 KRLETVKKPEIVSWK*FQLGWMDSYQMFPEEY 657
           KR+ T++ P I+SW+ F  G  +  ++   +Y
Sbjct: 824 KRIGTIRHPNIISWRAFYWGPKEQERLIISDY 855


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,945,152
Number of Sequences: 37544
Number of extensions: 331314
Number of successful extensions: 735
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)