Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30o15
         (675 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88308-6|AAB42320.1|  180|Caenorhabditis elegans Hypothetical pr...    30   1.7  
AF016426-4|AAB65343.1|  335|Caenorhabditis elegans Hypothetical ...    29   4.0  
Z66564-8|CAM84731.1|  892|Caenorhabditis elegans Hypothetical pr...    28   5.3  
AL032659-3|CAA21749.2|  892|Caenorhabditis elegans Hypothetical ...    28   5.3  
Z72505-1|CAA96608.1|  338|Caenorhabditis elegans Hypothetical pr...    28   7.0  
Z70718-5|CAA94670.1|  197|Caenorhabditis elegans Hypothetical pr...    27   9.2  

>U88308-6|AAB42320.1|  180|Caenorhabditis elegans Hypothetical
           protein C32E8.3 protein.
          Length = 180

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 207 TTITLYQSDFWFRQAKVLDDRRITTIDTGVIFNK 308
           T +T    D W + A VLD++ IT   TG+ F+K
Sbjct: 30  TEMTGKNFDKWLKDAGVLDNKAITGTMTGIAFSK 63


>AF016426-4|AAB65343.1|  335|Caenorhabditis elegans Hypothetical
           protein W07B8.1 protein.
          Length = 335

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 395 IIHYRNTRTRAWLAIVPALTRD 460
           IIHY N++   W A +PAL+R+
Sbjct: 26  IIHYVNSQKTTWTAGIPALSRN 47


>Z66564-8|CAM84731.1|  892|Caenorhabditis elegans Hypothetical
           protein Y71H9A.1 protein.
          Length = 892

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -3

Query: 151 VACSSSPIVEIKSYRLILRCTIGCAGRQK*SKKSL*NTCINNYKTFNQ 8
           ++C+S PI        +L+C  G  G+   SK+ L N  +   K ++Q
Sbjct: 1   MSCTSKPIDNCTYCVNVLKCVFGHFGKSVKSKRQLGNKLVATCKRYSQ 48


>AL032659-3|CAA21749.2|  892|Caenorhabditis elegans Hypothetical
           protein Y71H9A.1 protein.
          Length = 892

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -3

Query: 151 VACSSSPIVEIKSYRLILRCTIGCAGRQK*SKKSL*NTCINNYKTFNQ 8
           ++C+S PI        +L+C  G  G+   SK+ L N  +   K ++Q
Sbjct: 1   MSCTSKPIDNCTYCVNVLKCVFGHFGKSVKSKRQLGNKLVATCKRYSQ 48


>Z72505-1|CAA96608.1|  338|Caenorhabditis elegans Hypothetical
           protein C50C10.2 protein.
          Length = 338

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -3

Query: 337 TFQQK*RFLYLLKITPVSIVVILRSSKTFACLNQKSDWYNV 215
           TFQ    FLY+L  T + I ++++  K  A LN  +  +N+
Sbjct: 24  TFQGILPFLYILPTTVIMIAILVKYRKAKATLNSATMDHNI 64


>Z70718-5|CAA94670.1|  197|Caenorhabditis elegans Hypothetical
           protein C04G2.8 protein.
          Length = 197

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 26/87 (29%), Positives = 42/87 (48%)
 Frame = -3

Query: 673 RTRVPHIPRETSDSYPSILIEITSKIQSRVFLLSQASYGLSGRVATRIVIHSLYAYPASQ 494
           R  V  +   T+ S PS+++ I+   + R    S++S     R A+R  + S  +     
Sbjct: 55  RISVRSVSTHTAKS-PSLVVVISPSPRRRRSSTSRSSRRSVVRSASRGSV-SRRSSSRGS 112

Query: 493 ASGRSIRSRYLVASQSRHNGKPRTRSR 413
             GR+ RSR    S+SR   + R+RSR
Sbjct: 113 VYGRTGRSRSSKRSRSRSRSRSRSRSR 139


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,172,673
Number of Sequences: 27780
Number of extensions: 306613
Number of successful extensions: 824
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)