Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30o14
         (710 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0340 + 2534998-2535660                                           29   4.8  
05_01_0266 - 2040555-2040722,2041248-2041349,2041461-2041958,204...    29   4.8  
03_02_0147 - 5923117-5923215,5923882-5924069,5924885-5924977,592...    29   4.8  

>11_01_0340 + 2534998-2535660
          Length = 220

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = +3

Query: 405 KPSTSASKESCSPAK*C-TSSCGSIDPGY--DSSSTSAALAIRADGCHGW 545
           KP++S+S  S S       ++C   +PG    SSS+S     RAD C  W
Sbjct: 57  KPTSSSSSSSSSTGSASRAAACERKEPGSPASSSSSSGGKPGRADSCERW 106


>05_01_0266 -
           2040555-2040722,2041248-2041349,2041461-2041958,
           2042372-2042479,2042559-2042753
          Length = 356

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +2

Query: 620 AASQPSNSKQLLQLKPTINTRDSRLKDHAR 709
           AAS  S   Q L L   +N +DS LK+H R
Sbjct: 136 AASAKSAQSQCLSLLKELNEKDSSLKEHER 165


>03_02_0147 -
           5923117-5923215,5923882-5924069,5924885-5924977,
           5925499-5925628,5925720-5925802,5925893-5925976,
           5926253-5926316,5926375-5926515,5926801-5926863,
           5926968-5927006,5927126-5927185,5927567-5927624,
           5927708-5928099
          Length = 497

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = -3

Query: 147 GDNLRGPYLPAGYPRTATPTRRHFNLQ*NLKFGTSFYIVEKLSL*VLL 4
           G  L G ++P G+P + TP    F +   L+ G S YI   LS   LL
Sbjct: 140 GGRLLGAFVPEGFPGSVTPDYVPFQMWDTLQ-GLSTYIRAMLSTQALL 186


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,341,568
Number of Sequences: 37544
Number of extensions: 306996
Number of successful extensions: 798
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)