Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte30o13
(768 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr ... 34 0.026
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa... 29 0.97
SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces p... 29 0.97
SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown 7|Schizos... 28 1.3
SPAC869.11 ||SPAC922.08c|amino acid permease, unknown 6|Schizosa... 27 2.2
SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyce... 27 2.2
SPBC2F12.10 |||mitochondrial ribosomal protein subunit L35|Schiz... 27 3.0
SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual 27 3.9
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 27 3.9
SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces... 26 5.2
SPAC22F8.06 |pam1||20S proteasome component beta 6|Schizosacchar... 26 5.2
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy... 26 6.8
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1... 26 6.8
SPCC569.06 |||S. pombe specific multicopy membrane protein famil... 26 6.8
SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei... 25 9.0
SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr... 25 9.0
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom... 25 9.0
>SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 621
Score = 33.9 bits (74), Expect = 0.026
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +1
Query: 595 KRFTEVVKNMQKDLNKLKEAFYNMLDKQDGELYIYLQDINALEVIP-LVNWFNC 753
+RFTE+V +D + ++ Y D DG+ Y+ D+ +V P +V + C
Sbjct: 542 ERFTEIVMEELEDRDSARQVLYAFCDVADGKSYVTSDDLLRSQVRPNIVKFLEC 595
>SPCC550.03c |||RNA helicase involved in mRNA
catabolism|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1213
Score = 28.7 bits (61), Expect = 0.97
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = +1
Query: 88 CNKFLTTKMTDERNFRSSYYEKVGCRGVEEKKTLEILMKEKPWDRVKLKQFCLRF 252
CN L R+ R + K+ + KK ++L +E W +V+ +FC F
Sbjct: 910 CNTILRIDSGGIRDRRGGAFRKLSEQFASIKKFSDLLFEEVNWSKVRDFEFCEAF 964
>SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 450
Score = 28.7 bits (61), Expect = 0.97
Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 2/108 (1%)
Frame = +1
Query: 403 PSEIYDGSGTPQSKVFLEMWVLENEEWKP-PIFPETNFNSADTFLPIAKTLRELYDDPVD 579
P + Y SG+ + E+ +EN KP + +T + + L + D P
Sbjct: 37 PWQGYQRSGSLEEN---ELQEIENLTGKPLSAYVKTAEEDTTAYSNLFLKLLSMKDTPDV 93
Query: 580 VYWFSKRFTEVVKNMQKDLNKLKEAFYNMLDKQDGELYI-YLQDINAL 720
V + + + + N K L+ AFY+ L+K E YI YL D + L
Sbjct: 94 VNFALVKLADTLLNSNKFLSAFGPAFYDFLEKD--ESYINYLDDDSKL 139
>SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown
7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 581
Score = 28.3 bits (60), Expect = 1.3
Identities = 9/24 (37%), Positives = 18/24 (75%)
Frame = -3
Query: 130 SYVRPSFWLLRIYYINSIIIVGMI 59
S V+ FW + I+Y+ S+I++G++
Sbjct: 299 SAVKQVFWRIAIFYVVSLILIGLL 322
>SPAC869.11 ||SPAC922.08c|amino acid permease, unknown
6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 27.5 bits (58), Expect = 2.2
Identities = 8/22 (36%), Positives = 17/22 (77%)
Frame = -3
Query: 124 VRPSFWLLRIYYINSIIIVGMI 59
V+ FW + I+Y+ S+I++G++
Sbjct: 301 VKQVFWRIAIFYVVSLILIGLL 322
>SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 579
Score = 27.5 bits (58), Expect = 2.2
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = -3
Query: 124 VRPSFWLLRIYYINSIIIVGMI 59
V+ FW + I+YI S+I++G++
Sbjct: 301 VKQVFWRVAIFYIVSLILIGLL 322
>SPBC2F12.10 |||mitochondrial ribosomal protein subunit
L35|Schizosaccharomyces pombe|chr 2|||Manual
Length = 370
Score = 27.1 bits (57), Expect = 3.0
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Frame = +1
Query: 331 YVMKQRTEQYQD--LLYAVEKLQLIEPSEIYDGSGTPQSKVFLEMWVLENEEWKP-PIFP 501
Y++KQ+ E YQ LL +E++++I+ S I GS +P V L N+ P I P
Sbjct: 156 YMLKQQWEDYQKLLLLQRLEQMKVIKDSGI--GSFSPSVDVQLGFNPENNDSITPGTILP 213
Query: 502 ET 507
T
Sbjct: 214 ST 215
>SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual
Length = 456
Score = 26.6 bits (56), Expect = 3.9
Identities = 27/110 (24%), Positives = 54/110 (49%), Gaps = 7/110 (6%)
Frame = +1
Query: 325 YEYV-MKQRTEQYQDLLYAVEKLQLIEPSEIYDGSGTPQSKVF-----LEMWVLENEEWK 486
Y ++ + +RTE+ D + + L+LI+ ++Y G G K+F ++ V+ EW
Sbjct: 349 YSWIDVAERTEKVYDSICSENNLRLIDRLKLYYGCGQWAGKLFCLLIAIDYLVMVLLEW- 407
Query: 487 PPIFPETNFNSA-DTFLPIAKTLRELYDDPVDVYWFSKRFTEVVKNMQKD 633
I+P ++ + A D K ++ +D+ + V K+ T++ KD
Sbjct: 408 --IWPASDIDPAVDRVSSTFKISKQNFDESL-VLTDPKKKTKIKTACLKD 454
>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 862
Score = 26.6 bits (56), Expect = 3.9
Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +1
Query: 412 IYDGSGTPQSKVF--LEMWVLENEEWKPPIFPETNFNSADTFLPIAKTLRELYDDPVD 579
+ SG+ Q +F LE+ + + P FP+T+ N+ +TF+ + + + P+D
Sbjct: 477 VIGSSGSAQLAIFFILEVANVVAYAYVRPHFPQTSMNTLNTFISTMRLITVILMIPLD 534
>SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 583
Score = 26.2 bits (55), Expect = 5.2
Identities = 7/18 (38%), Positives = 15/18 (83%)
Frame = -3
Query: 112 FWLLRIYYINSIIIVGMI 59
FW + I+Y+ S+I++G++
Sbjct: 312 FWRIAIFYVVSLILIGLL 329
>SPAC22F8.06 |pam1||20S proteasome component beta
6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 225
Score = 26.2 bits (55), Expect = 5.2
Identities = 6/22 (27%), Positives = 15/22 (68%)
Frame = -1
Query: 534 EKCICRIKVCLWEYRWFPFFIF 469
+ C C ++ L+ R+FP++++
Sbjct: 90 QSCACMVRTLLYGKRFFPYYVY 111
>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.8 bits (54), Expect = 6.8
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +1
Query: 409 EIYD-GSGTPQSKVFLEMWVLENEEWKPPIFPETNFNSADTFLPIAKTLRELY 564
+I+D G SKVF +M + E++KPP ++D+ L L +++
Sbjct: 839 KIHDKGKKVNSSKVFEKMGIASMEKYKPPQESNVTKTNSDSTLGDDSVLDDIF 891
>SPBC947.11c |elg1||DNA replication factor C complex subunit
Elg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 920
Score = 25.8 bits (54), Expect = 6.8
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -2
Query: 257 TVNLRQNCFNLTRSQGFSFMRISNVFFSSTPRQP 156
++ R NC N + F ISN F ++ P +P
Sbjct: 724 SLECRDNCANAFQDNLVGFPTISNPFHANAPPEP 757
>SPCC569.06 |||S. pombe specific multicopy membrane protein family
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 478
Score = 25.8 bits (54), Expect = 6.8
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 6/38 (15%)
Frame = -1
Query: 531 KCICR------IKVCLWEYRWFPFFIF*NPHLQEYFAL 436
+CIC ++VCL + WF FFI +P Q F++
Sbjct: 233 RCICSRTKLHLVQVCL--FCWFSFFILNHPVKQRIFSI 268
>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
Length = 759
Score = 25.4 bits (53), Expect = 9.0
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +1
Query: 493 IFPETNFNSADTFLPIAKTLRELYDDP 573
+FP T S+ T +PIA + L + P
Sbjct: 18 VFPSTRIESSRTIVPIASIYKPLNERP 44
>SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 514
Score = 25.4 bits (53), Expect = 9.0
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +1
Query: 475 EEWKPPIFPETNFNSADTFLPIAKTLRELYDDPVDVYWFSKRFTEV--VKNMQKDLNKLK 648
E WK FPE F ++P ++ + VD + + R E +K+++ LN L+
Sbjct: 48 EAWKDKSFPEIAFEVMSLYIPRSEISADELKKLVDRSYSTFRHPETTPLKSLKNGLNVLE 107
>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 992
Score = 25.4 bits (53), Expect = 9.0
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 370 LYAVEKLQLIEPSEIYDGSGTPQSKVFLEMWVLENEE 480
L AV K L+ P + Y P+S+ L WV++ E
Sbjct: 955 LKAVAKKYLVNPKKSYTAVLGPKSEKQLPTWVIDKFE 991
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,277,084
Number of Sequences: 5004
Number of extensions: 72516
Number of successful extensions: 231
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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