Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte30o13
(768 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1208 - 28422941-28423139,28423854-28424434,28424705-284250... 29 3.1
09_04_0174 + 15346123-15346207,15346350-15346502,15346623-153467... 29 4.1
11_04_0307 + 16185405-16185713,16185847-16185942,16186626-161867... 29 5.4
02_01_0767 - 5709733-5709789,5709845-5709871,5710374-5710449,571... 29 5.4
10_07_0031 + 12051846-12052059,12052360-12052410,12053514-120535... 28 7.1
08_01_0537 + 4666488-4666870,4667706-4667850,4668299-4668392,466... 28 7.1
06_01_1183 + 10157813-10159909 28 7.1
>06_03_1208 - 28422941-28423139,28423854-28424434,28424705-28425078,
28425235-28425339,28425902-28425970,28426084-28426156,
28426395-28426478,28426616-28426648,28426731-28426790,
28427535-28427627,28427851-28427970,28428804-28428886,
28428887-28429007,28429114-28429164,28429245-28429333,
28429429-28429561,28430220-28430354,28430581-28430952,
28431679-28431796,28431883-28431998,28432131-28432442
Length = 1106
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = -1
Query: 657 ECFLQFVEIFLHVLHNLCKSLTEPIHIHWIIIKFPECLSNWEKCICRIKVCLWEYRW 487
E F E+ +H +S E +H + ++K L +K + + +CLW RW
Sbjct: 1008 EAFASLSELLTQYIHQKVESDIEELHKCFRLLKR---LQLAKKFVLEVSLCLWNTRW 1061
>09_04_0174 +
15346123-15346207,15346350-15346502,15346623-15346759,
15346856-15347005,15347405-15347506,15347832-15347996,
15348402-15348499,15348704-15348827,15349056-15349145,
15349555-15349599,15350438-15350833
Length = 514
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 289 VLLDILPVYPDSYEYVMKQRTEQYQDLLYAVEKLQLI 399
V LD L VY Y+Y + +E Q L+Y + K L+
Sbjct: 87 VKLDDLQVYGFDYDYTLSHYSEHLQCLIYDLAKKHLV 123
>11_04_0307 +
16185405-16185713,16185847-16185942,16186626-16186730,
16186938-16187090,16188395-16188478,16188566-16188694,
16188986-16189165,16189555-16189677,16189678-16189794,
16189889-16190053
Length = 486
Score = 28.7 bits (61), Expect = 5.4
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Frame = +1
Query: 262 ADYRNLVWKVLLDILPVYPDSYEYVMKQRTEQY-----QDLLYAVEKLQLIEPSEI 414
A R LVWK+LL LP + + ++++ QY + LL EK++ E S++
Sbjct: 127 AAVRPLVWKLLLGYLPTERAFWPHELEKKRSQYSAYKDEFLLNPSEKIRRFEESKL 182
>02_01_0767 -
5709733-5709789,5709845-5709871,5710374-5710449,
5710542-5710661,5711321-5711421,5711618-5711743,
5713504-5713596,5713694-5713816,5713889-5714032,
5714539-5714672,5714893-5715002,5715315-5715430,
5716438-5716572,5716650-5716820,5717545-5717709,
5718165-5718242,5718313-5718445,5718551-5718741,
5718842-5718914,5719001-5719056,5719142-5719300,
5719383-5719496,5719562-5719654,5720544-5720726,
5720801-5720878,5720966-5721052,5721135-5721216,
5721288-5721400,5721486-5721636,5721759-5721877,
5721966-5722163,5722377-5722442,5723837-5723957,
5724224-5724343,5724412-5724542,5725210-5725341,
5725418-5725519,5726231-5726437,5726510-5726626,
5727468-5727623,5727721-5727810,5728624-5728848,
5728969-5729091,5729202-5729284,5729459-5729618,
5730264-5730374,5730652-5730751,5731375-5731454,
5731752-5731847,5731961-5732110
Length = 1991
Score = 28.7 bits (61), Expect = 5.4
Identities = 29/141 (20%), Positives = 59/141 (41%), Gaps = 14/141 (9%)
Frame = +1
Query: 268 YRNLVWKVLLDILPVYPDSYEYVMKQRTEQYQDL----LYAVEKLQLIEPSEIYDGSGTP 435
YR+L W L D L +Y + ++ ++ + A+ + + +G+ T
Sbjct: 516 YRSLGWSTLFDCLSIYEEKFKESLQSSASVMPEFPEADAQALVSYLAVLQKVVENGNTTE 575
Query: 436 QSKVFLE---MWVLENEEWKPPIFPETNFNSADTFLPIAKTLR-------ELYDDPVDVY 585
+ K F + ++ L + E PP NS F+ ++ L+ E YD PV
Sbjct: 576 RRKWFPDIEPLFKLLSYENVPPFLKGALRNSITAFIKVSPLLKDAIWSYLEQYDLPVVTP 635
Query: 586 WFSKRFTEVVKNMQKDLNKLK 648
+ + +M+ +LN+++
Sbjct: 636 PLGQHNATQIYDMRFELNEVE 656
>10_07_0031 +
12051846-12052059,12052360-12052410,12053514-12053520,
12053621-12053804,12053920-12054001,12054174-12054243,
12054460-12054574
Length = 240
Score = 28.3 bits (60), Expect = 7.1
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +1
Query: 268 YRNLVWKVLLDILPV-YPDSYEYVMKQRTEQYQDLLYA 378
YR LV + D +P+ YPDSYE V K T++ + LYA
Sbjct: 172 YRKLV--EMEDRMPIPYPDSYENVAKAHTQE-RKRLYA 206
>08_01_0537 +
4666488-4666870,4667706-4667850,4668299-4668392,
4668518-4668798
Length = 300
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +1
Query: 568 DPVDVYWFSKRFTEVVKNMQKDLNKL 645
D +D +FS+ EVVK KDL+KL
Sbjct: 124 DAIDRVYFSEAPIEVVKEQDKDLSKL 149
>06_01_1183 + 10157813-10159909
Length = 698
Score = 28.3 bits (60), Expect = 7.1
Identities = 22/77 (28%), Positives = 35/77 (45%)
Frame = -2
Query: 545 LAIGRNVSAELKFVSGNIGGFHSSFSKTHISRNTLL*GVPEPSYISDGSINCNFSTAYRR 366
L++ VSA SG GGF+ SF ++ + L + S++ +GS+ TA
Sbjct: 15 LSLLLTVSASAAAASGGGGGFNVSFDSAALAFSDLT--LLGDSFLRNGSVGLTRDTAVPS 72
Query: 365 S*YCSVRCFITYSYESG 315
S SV C ++ G
Sbjct: 73 SSAGSVLCSRAVAFGGG 89
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,622,575
Number of Sequences: 37544
Number of extensions: 408603
Number of successful extensions: 876
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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