Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30o13
         (768 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125963-1|AAD14742.1|  339|Caenorhabditis elegans Serpentine re...    31   1.2  
U29612-1|AAA68801.1|  387|Caenorhabditis elegans Hypothetical pr...    30   1.6  
L07144-6|AAK21443.1|  834|Caenorhabditis elegans Temporarily ass...    29   2.8  
L07144-5|AAU20841.1|  837|Caenorhabditis elegans Temporarily ass...    29   2.8  
AC024746-6|AAT92059.1| 1361|Caenorhabditis elegans Patched famil...    29   4.8  
AC024746-5|AAT92058.1| 1358|Caenorhabditis elegans Patched famil...    29   4.8  
Z92849-8|CAB07427.3|  523|Caenorhabditis elegans Hypothetical pr...    28   8.4  
AL110479-9|CAB60315.3|  583|Caenorhabditis elegans Hypothetical ...    28   8.4  

>AF125963-1|AAD14742.1|  339|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 20 protein.
          Length = 339

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
 Frame = -1

Query: 702 QVNIQFSILFVQHIIECFLQFVEIFLHVLHN--LCKSLTEPIHIHWIIIKFPECLSNWEK 529
           +V   F +  + H +   L       ++LHN  L +     I I + I+   + L+ W  
Sbjct: 89  EVGFSFLLHCLTHSVWSLLISFGYRFYILHNPALSRLTLLKISIMFYILSLVQALTYWTL 148

Query: 528 CICRIKVCLWEYRWFPFF 475
            + R ++ L   +WFP++
Sbjct: 149 FVPRKEIILHAKQWFPYY 166


>U29612-1|AAA68801.1|  387|Caenorhabditis elegans Hypothetical
           protein C09B8.3 protein.
          Length = 387

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 20/72 (27%), Positives = 37/72 (51%)
 Frame = +1

Query: 481 WKPPIFPETNFNSADTFLPIAKTLRELYDDPVDVYWFSKRFTEVVKNMQKDLNKLKEAFY 660
           W+P  +P+   NS +  +P   TL     DP  +   + R T ++ N++K + KL+ A  
Sbjct: 13  WEPLTYPDPRTNSTECNVPHDGTL----CDPDHILTDTWRQT-ILDNIEKQMAKLETAKI 67

Query: 661 NMLDKQDGELYI 696
           +  DK + E ++
Sbjct: 68  HYTDKANPECFL 79


>L07144-6|AAK21443.1|  834|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 84, isoform a protein.
          Length = 834

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +1

Query: 598 RFTEVVKNMQKDLNKLKEAFYNMLDKQDGELYIYLQDIN 714
           R  E  K  QKD+N LK    ++ + QD  L + L+D++
Sbjct: 480 RLREKDKQSQKDINTLKSELTSLKEAQDKCLLVPLEDVS 518


>L07144-5|AAU20841.1|  837|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 84, isoform b protein.
          Length = 837

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +1

Query: 598 RFTEVVKNMQKDLNKLKEAFYNMLDKQDGELYIYLQDIN 714
           R  E  K  QKD+N LK    ++ + QD  L + L+D++
Sbjct: 480 RLREKDKQSQKDINTLKSELTSLKEAQDKCLLVPLEDVS 518


>AC024746-6|AAT92059.1| 1361|Caenorhabditis elegans Patched family
           protein 3, isoform b protein.
          Length = 1361

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
 Frame = +1

Query: 379 VEKLQLIEPSEIYDGSGTPQSKVFLEMWVLENEEWKPPIFPETNFNSADTFLPIAKTLRE 558
           + K  L + +++ +   T + K+F E W L +  +KP   P  +FNS      ++K L +
Sbjct: 202 LSKEALQQHTKLMEEISTYEVKMFNETWTLSDICFKP---PGPSFNSGPLAGIMSKLLDK 258

Query: 559 ----LYDDPVDVYW 588
               ++  P+D YW
Sbjct: 259 IIPCIWITPIDCYW 272


>AC024746-5|AAT92058.1| 1358|Caenorhabditis elegans Patched family
           protein 3, isoform a protein.
          Length = 1358

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
 Frame = +1

Query: 379 VEKLQLIEPSEIYDGSGTPQSKVFLEMWVLENEEWKPPIFPETNFNSADTFLPIAKTLRE 558
           + K  L + +++ +   T + K+F E W L +  +KP   P  +FNS      ++K L +
Sbjct: 202 LSKEALQQHTKLMEEISTYEVKMFNETWTLSDICFKP---PGPSFNSGPLAGIMSKLLDK 258

Query: 559 ----LYDDPVDVYW 588
               ++  P+D YW
Sbjct: 259 IIPCIWITPIDCYW 272


>Z92849-8|CAB07427.3|  523|Caenorhabditis elegans Hypothetical
           protein H12D21.10 protein.
          Length = 523

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -2

Query: 704 CK*IYNSPSCLSNIL*NASFNLLRSFCMFFTTSVNLLLNQ 585
           C  I+  P+ +  +  +A+ NL   FC FF    +L LNQ
Sbjct: 206 CDIIFEKPTIIMKL--DAAVNLYHHFCDFFNLYASLHLNQ 243


>AL110479-9|CAB60315.3|  583|Caenorhabditis elegans Hypothetical
           protein Y105C5B.11 protein.
          Length = 583

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -1

Query: 630 FLHVLHNLCKSLTEPIHIHWIIIKFPECLSNWEKCIC 520
           +LHVL   C S  E  H  + I  +  C  NW +  C
Sbjct: 93  YLHVLSPYCYSAIEVSHAVFSIFAYIVCDVNWSREYC 129


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,930,300
Number of Sequences: 27780
Number of extensions: 403868
Number of successful extensions: 1200
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1200
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)