Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30o13
         (768 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              24   1.4  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   3.1  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    22   7.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.5  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -1

Query: 699 VNIQFSILFVQHIIEC 652
           +N+QFS+L+   IIEC
Sbjct: 699 INVQFSVLYGFVIIEC 714


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
 Frame = +2

Query: 446 YSWRCGF*KMKNGNHLYSQRQTLIL--QIHFSQLLRHSGNFMMIQWMCI 586
           Y W     + K G   Y++ QTL L  + H+++ L       +   +C+
Sbjct: 261 YPWMRSQFERKRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCL 309


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 425 EPSYISDGSINCNFSTAY 372
           EP  IS  S +CN+S  Y
Sbjct: 300 EPKIISSLSNSCNYSNNY 317


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +1

Query: 328 EYVMKQRTEQYQDLLYA 378
           E + ++R +QYQD LY+
Sbjct: 39  ELMGRRRWKQYQDTLYS 55


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,886
Number of Sequences: 438
Number of extensions: 4807
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)