Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30o12
         (258 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    25   2.2  
SPCC417.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    24   2.9  
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi...    24   3.8  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    24   3.8  
SPCC1739.02c |mrpl22||mitochondrial ribosomal protein subunit L2...    23   5.1  
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe...    23   6.7  
SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc...    23   6.7  
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar...    23   8.9  
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c...    23   8.9  

>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 24.6 bits (51), Expect = 2.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 30  TAEAPLCCENSQVKVCS 80
           T+E P CC N +  VC+
Sbjct: 281 TSEKPSCCSNGKSTVCA 297


>SPCC417.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 100

 Score = 24.2 bits (50), Expect = 2.9
 Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
 Frame = -2

Query: 251 HFIEVMFEISNSVINANTVRFIYNFYRLSFIRKNNSVN------KLYGSLXFRLHC*F*C 90
           HFI    ++++S      +   +NF R    ++N S++      K      FRL C +  
Sbjct: 14  HFIISFMKMNDSYTPYTYIVSFHNFVRFPIKQRNTSIHHAPNKRKRKDEAPFRL-CIYTL 72

Query: 89  YHRRTNFHLGI 57
           +H  T F  G+
Sbjct: 73  FHAHTCFSCGL 83


>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
           spliced|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 23.8 bits (49), Expect = 3.8
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -2

Query: 245 IEVMFEISNSVINANTVRFIYNFYRLSFIRKNN 147
           I+V  E  N++ N NT+  +Y    L+ +RK +
Sbjct: 24  IDVFDEFLNAIGNENTITPVYADSSLTHLRKKS 56


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 23.8 bits (49), Expect = 3.8
 Identities = 13/57 (22%), Positives = 23/57 (40%)
 Frame = +2

Query: 50  LRKFPSESLFVGGNTKINSATGSXDYHIIY*QSYFYE*MKVYKNYK*NELYLHLLHC 220
           LR   S  + +GG       T    +  +  Q  F+E  K +  ++  ++YL    C
Sbjct: 512 LRTCKSRCIEIGGEQFSGFLTNIKPFEAVTFQKLFFEVGKGFSYFRPEQVYLETFFC 568


>SPCC1739.02c |mrpl22||mitochondrial ribosomal protein subunit
           L22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 249

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 233 FEISNSVINANTVRFIYNFYRLSFIRK 153
           F + +S I  N+  + Y F  LSF+R+
Sbjct: 14  FLVPSSTIGLNSKTYHYKFPLLSFVRE 40


>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -2

Query: 200 TVRFIYNFYRLSFIRKNNSVN 138
           T++ +YNFYR  ++ + +  N
Sbjct: 561 TLQRLYNFYRFQYLEEQSLYN 581


>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 920

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 227 ISNSVINANTVRFIYNFYRLSFIRKNNSVNKLY 129
           IS+    A+T+R +Y+F  LS        ++LY
Sbjct: 327 ISSGSSYASTLRKVYDFSELSLPTNGKDYDELY 359


>SPMIT.02 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 384

 Score = 22.6 bits (46), Expect = 8.9
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 188 IYNFYRLSFIRKNNSVNKLY 129
           +YN+  L FI++N  +  LY
Sbjct: 145 LYNYRILYFIKRNLGIGSLY 164


>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 571

 Score = 22.6 bits (46), Expect = 8.9
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 2   RQTMELRKHDCRSPTLLRKFPSESL 76
           R   +LR H+    TLL+ FPS  L
Sbjct: 281 RAFCDLRDHNVTLITLLKAFPSVQL 305


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 946,440
Number of Sequences: 5004
Number of extensions: 14627
Number of successful extensions: 43
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 51555950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)