Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30o12
         (258 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0149 - 7182562-7182891,7182989-7183575,7185334-7185433,718...    26   3.6  
02_05_1359 + 35915507-35915905,35915999-35916188,35916298-35917133     26   4.8  
04_03_0893 - 20602008-20602361,20602455-20602604,20602723-206028...    25   6.3  
12_01_0561 + 4550119-4550265,4550716-4550791,4551601-4551668,455...    25   8.4  
07_01_0157 + 1109499-1111022                                           25   8.4  
06_02_0213 + 13087707-13088423                                         25   8.4  
06_01_0858 + 6503701-6504069,6505114-6505231,6505485-6505531           25   8.4  

>02_02_0149 -
           7182562-7182891,7182989-7183575,7185334-7185433,
           7185547-7185563,7185928-7186369,7186501-7186629
          Length = 534

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 26  HDCRSPTLLRKFPSESLFVGGNTKINSA 109
           HDC+SP + R     ++ + GN K   A
Sbjct: 132 HDCKSPIIHRDIKPTNILLDGNLKAKIA 159


>02_05_1359 + 35915507-35915905,35915999-35916188,35916298-35917133
          Length = 474

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 70  KFVRRW*H*NQQCNRKXRLPYNLLTELFLRINES 171
           KF+R W H  ++  R  RLP    ++  LRI +S
Sbjct: 33  KFLRDWRHKKERTARPDRLPLPKSSKKGLRIEDS 66


>04_03_0893 -
           20602008-20602361,20602455-20602604,20602723-20602835,
           20603105-20603377,20603746-20603886,20604638-20604974
          Length = 455

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = +3

Query: 9   PWSYANMTAEAPLCCENSQVKVCSSVVTLKSTVQPEAKTTI*F 137
           PWS           C +S   + S V+TL  +  PEA   + F
Sbjct: 306 PWSQYQKIGALSRQCASSMEAMASYVITLTKSQYPEANPELSF 348


>12_01_0561 +
          4550119-4550265,4550716-4550791,4551601-4551668,
          4551951-4552039,4552136-4552313,4553096-4553229,
          4553307-4553520,4553601-4553785,4553930-4554025,
          4554105-4554231
          Length = 437

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -2

Query: 41 GFGSHVCVTP 12
          G+GSH CVTP
Sbjct: 60 GYGSHACVTP 69


>07_01_0157 + 1109499-1111022
          Length = 507

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 42  PLCCENSQVKVCSS 83
           P+CC++   KVCSS
Sbjct: 289 PMCCKHRSQKVCSS 302


>06_02_0213 + 13087707-13088423
          Length = 238

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 47  LLRKFPSESLFVGGNTKINSATGSXDYHIIY*QSYF 154
           ++   PS S   G NT I+S   S D H++  + YF
Sbjct: 203 MIHHVPSSSY--GWNTSIDSKPNSSDAHVVGARRYF 236


>06_01_0858 + 6503701-6504069,6505114-6505231,6505485-6505531
          Length = 177

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 109 CTVDFSVTTDEQTFTWEFSQQSGAS 35
           C +  S   D   F W FSQQ+ A+
Sbjct: 113 CILPESAFADTDLFGWHFSQQAAAN 137


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,477,151
Number of Sequences: 37544
Number of extensions: 75966
Number of successful extensions: 174
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 14,793,348
effective HSP length: 64
effective length of database: 12,390,532
effective search space used: 260201172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)