Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30o12
         (258 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   2.4  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    21   3.2  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    21   3.2  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    21   3.2  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    20   4.3  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    19   7.4  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    19   9.8  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.0 bits (42), Expect = 2.4
 Identities = 9/28 (32%), Positives = 12/28 (42%)
 Frame = -2

Query: 203 NTVRFIYNFYRLSFIRKNNSVNKLYGSL 120
           NT+  IY+   L     N    +LY  L
Sbjct: 14  NTLHIIYSVAGLKIFEANPDTKRLYDDL 41


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 20.6 bits (41), Expect = 3.2
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = -2

Query: 59  IFAAKWGFGSHVC 21
           +   KW FG H+C
Sbjct: 97  LLLGKWIFGIHLC 109


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 20.6 bits (41), Expect = 3.2
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = -2

Query: 59  IFAAKWGFGSHVC 21
           +   KW FG H+C
Sbjct: 97  LLLGKWIFGIHLC 109


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 20.6 bits (41), Expect = 3.2
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = -2

Query: 59  IFAAKWGFGSHVC 21
           +   KW FG H+C
Sbjct: 97  LLLGKWIFGIHLC 109


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 20.2 bits (40), Expect = 4.3
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
 Frame = -3

Query: 163 LFVKITLLINYMVVX--ASGCTVDF---SVTTDEQTFTWE 59
           L +K++  +N+++       C +     S TTDE  F W+
Sbjct: 157 LTLKLSCAMNFLIYPHDTQECKLQMESLSHTTDEMIFQWD 196


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 19.4 bits (38), Expect = 7.4
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +2

Query: 77  FVGGNTKIN 103
           FVGGN K+N
Sbjct: 6   FVGGNWKMN 14


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 19.0 bits (37), Expect = 9.8
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = -2

Query: 209 NANTVRFIYNFYRLSFIRKNNSVNKLYGSLXF 114
           N N     YN Y       NN+  KLY ++ +
Sbjct: 326 NYNNYNNNYNNYNNYNNNYNNNYKKLYYNINY 357


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,228
Number of Sequences: 438
Number of extensions: 876
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  4636803
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)