Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte30o10
(794 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr... 206 3e-54
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 28 1.3
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 27 2.3
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy... 27 3.1
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe... 27 4.1
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa... 26 5.4
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 26 5.4
SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom... 26 7.1
SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr 1... 26 7.1
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 26 7.1
SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr 3||... 25 9.4
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 25 9.4
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch... 25 9.4
>SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 322
Score = 206 bits (503), Expect = 3e-54
Identities = 107/187 (57%), Positives = 133/187 (71%), Gaps = 1/187 (0%)
Frame = +3
Query: 231 MSALDQLKQHSTVV-ADTGDFEAMKEYKPTDATTNPSLILSAAGMEQYQHILDKAIKYGK 407
MS+L+QLK TVV +DTGDFE++ +YKP DATTNPSLIL+A+ QY ++D A+ Y K
Sbjct: 1 MSSLEQLKATGTVVVSDTGDFESIAKYKPQDATTNPSLILAASKKPQYAALVDAAVDYAK 60
Query: 408 DNGSSIEEQVAETLDMLSVLFGCEILKIIPGRVSVEVDARLSFDKDASIAKAIKFINLFA 587
G SI Q+ D L + FG +IL I+PGRVS EVDAR SFD +I KA I L+
Sbjct: 61 AKGGSINSQIEIAFDRLLIEFGTKILAIVPGRVSTEVDARYSFDTQTTIEKARHLIKLYE 120
Query: 588 EHGIKKERILIKLASTWEGIQAAKELEKKHGIHCNLTLLFSLYQAIACAEAMLH*YHHLX 767
GI +ER+LIK+AST+EGIQAAK+LE++ GIHCNLTLLFS QA+ACAEA +
Sbjct: 121 AEGIGRERVLIKIASTYEGIQAAKQLEEE-GIHCNLTLLFSFVQAVACAEANVTLISPFV 179
Query: 768 GRILDGY 788
GRILD Y
Sbjct: 180 GRILDFY 186
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 28.3 bits (60), Expect = 1.3
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = -2
Query: 598 IPCSANKLINLIAFAMLASLSNDNLASTSTDTRPGIIFNISHPKSTLSISKVSATCSSME 419
+P S NK+ + F + +N S+ ++ I N S P +S + +SAT S+E
Sbjct: 150 VPRSLNKIHDPSRF--IKDNDVENRIHVSSASKVASISNTSKPNPIVSENPISATSVSIE 207
Query: 418 LPL 410
+P+
Sbjct: 208 IPI 210
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 27.5 bits (58), Expect = 2.3
Identities = 12/42 (28%), Positives = 28/42 (66%)
Frame = +1
Query: 565 LNLSIYLLNMVLKKKEF*LNWPPLGKEFKQPKSWRRSMESIV 690
L+ SI + + ++ +F L+ P+ ++FK +S+RR ++S++
Sbjct: 362 LDTSISQIRVTHEQAKFLLSVIPVNQDFKALQSYRRILDSVI 403
>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 800
Score = 27.1 bits (57), Expect = 3.1
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = -2
Query: 607 SFLIPCSANKLINLIAFAMLASLSNDNLASTSTDTRPGIIFNISHPKSTLS 455
S LIP +K +A +SL ++NLA+ + T IF+++ PK S
Sbjct: 159 SILIPTFVSKFNEFLALD--SSLRDNNLATVAVITTDKAIFSLNVPKKKRS 207
>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 652
Score = 26.6 bits (56), Expect = 4.1
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +3
Query: 192 VSMSGEPD-TKRTKMSALDQLKQHSTVVADTGDFEAMKEYKPTDATTNPSLILSAAGMEQ 368
VS S PD TKR S L ++K + ++ K+ KP+ T+ + L+ A M
Sbjct: 141 VSQSFFPDVTKRLPCSCLSEIKNIDDLGLKQRILDSYKKQKPSGQLTSMQIELAKA-MFN 199
Query: 369 YQHI 380
YQ +
Sbjct: 200 YQDV 203
>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 26.2 bits (55), Expect = 5.4
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = +3
Query: 264 TVVADTGDFEAMKEYKPTDATTNPSLILSAAGMEQYQHILDKAIKYGKDNGSSIEEQVAE 443
T +AD + + + D T L+L + G+E Y D A N S+EE + +
Sbjct: 273 TTIADYKEVAIQNKIEDDDTWTAQELVLLSEGVEMYSD--DWAKVASHVNTKSVEECILK 330
Query: 444 TLDMLS 461
L++ S
Sbjct: 331 FLNLPS 336
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 26.2 bits (55), Expect = 5.4
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 579 LFAEHGIKKERILIKLASTWEGIQAAKELEKKHGIHCNL 695
L +G K I++ + T + IQ L +KH IHC+L
Sbjct: 788 LIKSNGFKGLPIVVIKSITRQLIQCLTLLNEKHVIHCDL 826
>SPAC6G10.08 |idp1||isocitrate dehydrogenase
Idp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 418
Score = 25.8 bits (54), Expect = 7.1
Identities = 9/30 (30%), Positives = 20/30 (66%)
Frame = -1
Query: 479 FTPKKHTQHIQSFSHLFFNGASIILSIFNS 390
FTPK + ++++ FNG+ + +S++N+
Sbjct: 166 FTPKGNPSAKETYNVYEFNGSGVAMSMYNT 195
>SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 588
Score = 25.8 bits (54), Expect = 7.1
Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +3
Query: 567 KFINLFAEHGIKKERI-LIKLASTWEGIQAA 656
+ ++LF+ HG++KE + L+ AS + IQ A
Sbjct: 216 RILSLFSFHGVRKESLELLWRASKYPNIQGA 246
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 25.8 bits (54), Expect = 7.1
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -2
Query: 673 FFSNSLAA*IPSQVEANLIKILSFLIPCSANKLI 572
FF+ SLA IP V + + + LIP A K++
Sbjct: 885 FFAQSLATPIPEPVPVDNMPTFTVLIPHYAEKIL 918
>SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 454
Score = 25.4 bits (53), Expect = 9.4
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +3
Query: 600 KKERILIKLASTWEGIQAAKEL 665
+K+ I + + WEG+Q AKEL
Sbjct: 299 EKKTITLHNGNQWEGLQMAKEL 320
>SPBC30B4.04c |sol1||SWI/SNF complex subunit
Sol1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 865
Score = 25.4 bits (53), Expect = 9.4
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +1
Query: 697 HCCSLCTRLLPVLKQCY 747
HC +C R LP+L+Q +
Sbjct: 716 HCLKICERRLPLLQQSF 732
>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 701
Score = 25.4 bits (53), Expect = 9.4
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -2
Query: 493 IIFNISHPKSTLSISKVSATCSSMELPLSF 404
II N+ KS L+ KV A CS + LSF
Sbjct: 596 IIQNVEKLKSYLNSFKVQAECSEISKILSF 625
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,321,144
Number of Sequences: 5004
Number of extensions: 70863
Number of successful extensions: 210
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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