Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30o10
         (794 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006729-1|AAK93861.1|  319|Caenorhabditis elegans Hypothetical ...   228   3e-60
AC006729-2|AAM15613.1|  165|Caenorhabditis elegans Hypothetical ...    33   0.31 
Z68159-7|CAA92286.1|  604|Caenorhabditis elegans Hypothetical pr...    31   0.72 
U43283-1|AAC69025.1|  412|Caenorhabditis elegans Hypothetical pr...    28   8.9  
AF067611-2|AAW88406.1| 2302|Caenorhabditis elegans Cadherin fami...    28   8.9  
AF067214-8|AAC17008.1|   69|Caenorhabditis elegans Hypothetical ...    28   8.9  

>AC006729-1|AAK93861.1|  319|Caenorhabditis elegans Hypothetical
           protein Y24D9A.8a protein.
          Length = 319

 Score =  228 bits (558), Expect = 3e-60
 Identities = 112/188 (59%), Positives = 143/188 (76%)
 Frame = +3

Query: 231 MSALDQLKQHSTVVADTGDFEAMKEYKPTDATTNPSLILSAAGMEQYQHILDKAIKYGKD 410
           MS L+QLK  S VVADTGDF A+KE++PTDATTNPSLIL+A+ MEQY  ++D+++ Y K+
Sbjct: 1   MSVLEQLKGASVVVADTGDFNAIKEFQPTDATTNPSLILAASKMEQYAALIDQSVAYAKE 60

Query: 411 NGSSIEEQVAETLDMLSVLFGCEILKIIPGRVSVEVDARLSFDKDASIAKAIKFINLFAE 590
           + S  +E +   +D L V+FG EILK IPGRVS EVDARLSFD  ASI +A+  I  + +
Sbjct: 61  HASGHQEVLQAAMDRLFVVFGKEILKTIPGRVSTEVDARLSFDTQASIDRALGLIAQYEK 120

Query: 591 HGIKKERILIKLASTWEGIQAAKELEKKHGIHCNLTLLFSLYQAIACAEAMLH*YHHLXG 770
            GI K+RILIKLASTWEGI+AAK LE KHGIHCN+TLLF+  QA+ACAE+ +       G
Sbjct: 121 EGISKDRILIKLASTWEGIRAAKFLESKHGIHCNMTLLFNFEQAVACAESGVTLISPFVG 180

Query: 771 RILDGYVE 794
           RI+D +V+
Sbjct: 181 RIMDWFVK 188


>AC006729-2|AAM15613.1|  165|Caenorhabditis elegans Hypothetical
           protein Y24D9A.8b protein.
          Length = 165

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 15/34 (44%), Positives = 23/34 (67%)
 Frame = +3

Query: 693 LTLLFSLYQAIACAEAMLH*YHHLXGRILDGYVE 794
           +TLLF+  QA+ACAE+ +       GRI+D +V+
Sbjct: 1   MTLLFNFEQAVACAESGVTLISPFVGRIMDWFVK 34


>Z68159-7|CAA92286.1|  604|Caenorhabditis elegans Hypothetical
           protein C33D9.8 protein.
          Length = 604

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
 Frame = +3

Query: 408 DNGSSIEEQVAETLDMLSVLFGCEILKIIPGRVSV-EVDARLSFDKDASIAKAIKFINLF 584
           D  S++ E++ E    ++++      +    +V + E  A+L+ +KD  I K  + I L 
Sbjct: 218 DPSSTMNEELTELRSQMNLIIEYNEKQETVWQVKLSEASAQLN-EKDLVIEKITRKIELL 276

Query: 585 AEHGIKKERILIKLASTWEGIQAAKELEK 671
            E+ +KK++ + +L   +E     K L+K
Sbjct: 277 QENNVKKDQRIYELEQCFESEDYCKILQK 305


>U43283-1|AAC69025.1|  412|Caenorhabditis elegans Hypothetical
           protein T25G12.5 protein.
          Length = 412

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
 Frame = +3

Query: 291 EAMKEYKPTDATTNPSLILSAAGMEQYQHILDKAIKYGKDN---GSSIEEQVAETLDMLS 461
           E  K    T   T P++   A G+      LD A +Y  +    G+ I      +  +  
Sbjct: 255 EGFKVAMKTFDKTRPTVAALATGVAY--RCLDVATQYSLERKAFGTQIANHQGVSFLLAE 312

Query: 462 VLFGCEILKIIPGRVSVEVDARLSFDKDASIAK 560
           +   CE+ +++  +   EVDA       ASIAK
Sbjct: 313 MAINCELARLMTYKSGAEVDAGRPGSYYASIAK 345


>AF067611-2|AAW88406.1| 2302|Caenorhabditis elegans Cadherin family
           protein 10 protein.
          Length = 2302

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
 Frame = +3

Query: 180 NISLVSMSGEPDTKRTKMSALDQLKQHSTVVADTGDFEAMKEYKPTD--ATTNPSLILSA 353
           NIS+  +   P TKRT+++  D+ K   T V  T       E    D  + T   L L  
Sbjct: 196 NISVDVIKLAPTTKRTRVTVPDRPKLMETTVPVTSSSSTSSEMIEVDGESETQEDLTLGG 255

Query: 354 AGME 365
            G E
Sbjct: 256 GGAE 259


>AF067214-8|AAC17008.1|   69|Caenorhabditis elegans Hypothetical
           protein F56C3.8 protein.
          Length = 69

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -2

Query: 604 FLIPCSANKLINLIAFAMLASLSNDNLASTSTDTRPGIIFNI 479
           F++    N ++ LI      SL +D L   +TD +PG++  +
Sbjct: 5   FIVTKMKNTVLLLILALFFISLRDDGLQMPNTDLKPGLLMQM 46


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,800,067
Number of Sequences: 27780
Number of extensions: 376077
Number of successful extensions: 1025
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1023
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)