Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte30o09
(771 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0701 - 35620559-35620777,35620872-35620949,35621038-356211... 188 3e-48
12_02_0792 - 23191120-23191313,23191419-23191775,23192027-231921... 32 0.58
07_01_0459 - 3478756-3478923,3479027-3479092,3479200-3479280,347... 29 3.1
12_01_0143 + 1096622-1096882,1096951-1097264,1097361-1097382 29 5.4
01_06_1580 - 38406740-38407257,38407481-38407552,38408309-384083... 29 5.4
12_01_0090 + 717524-719080 28 7.2
10_01_0042 + 562246-563550 28 7.2
09_03_0058 + 11950668-11950701,11951068-11951106,11951586-119519... 28 7.2
09_01_0102 + 1582793-1582898,1582988-1583093,1584115-1584172,158... 28 7.2
08_02_0696 + 20137167-20137485,20137601-20137740,20137841-20137951 28 7.2
>03_06_0701 -
35620559-35620777,35620872-35620949,35621038-35621191,
35621279-35621391,35621487-35621586,35622193-35622389,
35622470-35622526,35622630-35622734,35622824-35622931,
35623651-35623848,35624022-35624024
Length = 443
Score = 188 bits (459), Expect = 3e-48
Identities = 89/166 (53%), Positives = 122/166 (73%)
Frame = +2
Query: 272 IQEAIDQLLALEKQTRTGADMVSTSRILVTVVQIYFEAKNWSALNDHIVVLSKRRSQLKQ 451
+ AI+ LL +EKQ R D+ T + + +V++ ++A W LND IVVLSKRR QLKQ
Sbjct: 8 LDAAIESLLNVEKQMRLAGDVAGTRKAAIDIVELCYKAGAWKTLNDQIVVLSKRRGQLKQ 67
Query: 452 AVVKMVQECYTYVDKTPDKETKIKLIETLRTITEGKIYVEVERARLTHILAKIREEEGNV 631
A+ MVQ+ Y+D TPD +T+I+LI+TL +++ GKIYVE+ERARL LAKI+EE+G +
Sbjct: 68 AITAMVQKAMEYIDLTPDMDTRIELIKTLSSVSAGKIYVEIERARLIKRLAKIKEEQGQI 127
Query: 632 AEAAKIIQELQVETYGSMDKREKVELILEQMRLCLAIKDYVRTQII 769
EAA ++QE+ VET+GSM K EK+ ILEQ+RLCL +DYVR QI+
Sbjct: 128 DEAADLMQEVAVETFGSMAKTEKIAFILEQVRLCLDRQDYVRAQIL 173
>12_02_0792 -
23191120-23191313,23191419-23191775,23192027-23192108,
23192186-23193097,23193190-23193346,23193540-23193694,
23194667-23194819,23195334-23195627,23195711-23195896,
23196062-23196662,23196868-23196992,23197101-23197197,
23197299-23197411,23198129-23198233
Length = 1176
Score = 31.9 bits (69), Expect = 0.58
Identities = 26/108 (24%), Positives = 50/108 (46%), Gaps = 7/108 (6%)
Frame = +2
Query: 161 DIGGLDASGKIIKMEVDYSATCDEKLPLW-----KSWAAQGKIQEAIDQLL-ALEKQTRT 322
D+ + + + K+EVD S + W K + Q K A ++ A EK+TR
Sbjct: 495 DMDEEEKTAPVEKVEVDLSLSAHANARRWYELKKKQESKQEKTVTAHEKAFKAAEKKTRL 554
Query: 323 GADMVSTSRILVTVVQIY-FEAKNWSALNDHIVVLSKRRSQLKQAVVK 463
T + + +++ FE NW +++ +++S R +Q + +VK
Sbjct: 555 QLAQEKTVAAITHMRKVHWFEKFNWFISSENYLIISGRDAQQNELIVK 602
>07_01_0459 -
3478756-3478923,3479027-3479092,3479200-3479280,
3479402-3479479,3479625-3479711,3480127-3480223,
3480266-3480339,3480687-3480775,3480878-3480926,
3481090-3481146,3481256-3481357,3482365-3482382
Length = 321
Score = 29.5 bits (63), Expect = 3.1
Identities = 29/121 (23%), Positives = 54/121 (44%), Gaps = 1/121 (0%)
Frame = +2
Query: 305 EKQTRTGADMVSTSRILVTVVQIYFEAKNWSALNDHIVVLSKRRSQLKQAVVKMVQECYT 484
E+ T M S S ++ + K ++D V+ R + + V + V +T
Sbjct: 126 EQTTGVHKAMNSCSSTMLAKFYRAVKKKLKERMDDFQVLREAIRQEYRDVVERRV---FT 182
Query: 485 YVDKTPDKETKIKLIETLRTITEGKIYVEVE-RARLTHILAKIREEEGNVAEAAKIIQEL 661
PD+ET LIET R+ + ++ + R ++ +A+I+E V + + + EL
Sbjct: 183 VTGSRPDEETVDNLIETGRSEQIFQEAIQQQGRGQILDTVAEIQERHDAVRDLERKLLEL 242
Query: 662 Q 664
Q
Sbjct: 243 Q 243
>12_01_0143 + 1096622-1096882,1096951-1097264,1097361-1097382
Length = 198
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 5/29 (17%)
Frame = +2
Query: 239 PLWKSWAAQGKIQE-----AIDQLLALEK 310
P+WK + QGK QE A++QLL LEK
Sbjct: 91 PIWKWFTTQGKEQEDAYEAAMEQLLVLEK 119
>01_06_1580 -
38406740-38407257,38407481-38407552,38408309-38408365,
38408476-38408532,38408643-38408699,38408809-38408865,
38409371-38409424,38409744-38409800,38410023-38410076,
38412208-38412220,38413530-38413580,38414134-38414193,
38414640-38414761,38415033-38415894,38416468-38416667,
38417159-38417238,38417525-38417619
Length = 821
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = -3
Query: 136 LKFICLYQNNLLNSVNVTI--HKIIACVINSTNLSNHYSYSKPTSH 5
LK I L + ++N + K++ ++ N NHYSY P H
Sbjct: 360 LKLIYLRRTLIMNLMGQDTFEQKVVGSLVRVKNDDNHYSYQMPKKH 405
>12_01_0090 + 717524-719080
Length = 518
Score = 28.3 bits (60), Expect = 7.2
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +2
Query: 242 LWKSWAAQGKIQEAIDQLLALEKQTRTGADMVSTSRI-LVTVVQIYFEAKNWSALNDHIV 418
LWK A ++ ID + R +++ T LVT+ +Y EAK W + +H+
Sbjct: 443 LWKMLLAACRVHGHIDLAYMFFHELR---ELILTDNGGLVTISNVYAEAKRWDDV-EHLR 498
Query: 419 VLSKRRSQLKQA 454
+ + S LK A
Sbjct: 499 MKVRCNSALKHA 510
>10_01_0042 + 562246-563550
Length = 434
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/44 (31%), Positives = 27/44 (61%)
Frame = +2
Query: 395 SALNDHIVVLSKRRSQLKQAVVKMVQECYTYVDKTPDKETKIKL 526
S+L +HI+V ++RR+ + +AV ++ +C T V T + + L
Sbjct: 234 SSLINHIIVGARRRATVFEAVAAVLWQCRTRVVMTDPEAPAVLL 277
>09_03_0058 + 11950668-11950701,11951068-11951106,11951586-11951982,
11952016-11952314,11953743-11956795
Length = 1273
Score = 28.3 bits (60), Expect = 7.2
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = -3
Query: 166 DISVCSHFEKLK---FICLYQNNLLNSVNVTIHKIIACVINSTNL 41
DIS C F+KL F LY+ +L++ N T+H + +I NL
Sbjct: 883 DISACD-FDKLPTDLFCRLYKLEILDAQNCTLHAVPKDIIKLVNL 926
>09_01_0102 +
1582793-1582898,1582988-1583093,1584115-1584172,
1584676-1584745,1585132-1585197,1586374-1586429,
1587992-1588078,1588819-1589139,1589827-1589946,
1590747-1590881,1591529-1591605,1591681-1591756,
1592800-1592874,1592971-1593075,1593299-1593374,
1594482-1594617,1594702-1594804,1595186-1595298,
1596907-1597111,1597173-1597301,1597403-1597517,
1597710-1597795,1599108-1599203,1599615-1599751,
1600374-1600476,1601809-1601888,1602013-1602091,
1602241-1602298,1602489-1602586,1602673-1602767,
1602861-1602918
Length = 1074
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +2
Query: 590 THILAKIREEEGNVAEAAKIIQELQVETYGSMDKREKVELILEQMR 727
T + KI E E +A+ +II + + DKRE +EL ++ ++
Sbjct: 652 TSLGEKIAEMESEIADMERIISQRTRDMKKPNDKREDIELKIKNLK 697
>08_02_0696 + 20137167-20137485,20137601-20137740,20137841-20137951
Length = 189
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +2
Query: 506 KETKIKLIETLRTITEGKIYVEVERARLTHILAKIREEE 622
K TKIKL++ T+ GK+Y V +T L R+E+
Sbjct: 81 KITKIKLLKPKETLLLGKVYRLVTSQEVTKALQARRQEK 119
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,764,363
Number of Sequences: 37544
Number of extensions: 360791
Number of successful extensions: 867
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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