Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte30o09
(771 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40029-6|AAA81126.1| 490|Caenorhabditis elegans Proteasome regu... 186 2e-47
Z81136-1|CAB03458.1| 1256|Caenorhabditis elegans Hypothetical pr... 29 4.8
U49956-4|AAK77620.1| 1117|Caenorhabditis elegans Variable abnorm... 28 8.5
U49956-3|AAK77621.1| 1122|Caenorhabditis elegans Variable abnorm... 28 8.5
U23172-2|AAM22069.2| 538|Caenorhabditis elegans Ubiquitin prote... 28 8.5
AF040269-1|AAC38970.1| 1122|Caenorhabditis elegans Eph receptor ... 28 8.5
>U40029-6|AAA81126.1| 490|Caenorhabditis elegans Proteasome
regulatory particle,non-atpase-like protein 5 protein.
Length = 490
Score = 186 bits (452), Expect = 2e-47
Identities = 97/195 (49%), Positives = 130/195 (66%)
Frame = +2
Query: 185 GKIIKMEVDYSATCDEKLPLWKSWAAQGKIQEAIDQLLALEKQTRTGADMVSTSRILVTV 364
G++ KME DYS DE L L AQ A++ L +EK TR GADM S +R++ +
Sbjct: 34 GRLFKMEQDYSKQVDEAL-LKARDIAQKDAVAAVESLNNIEKLTRLGADMKSNTRVVQYM 92
Query: 365 VQIYFEAKNWSALNDHIVVLSKRRSQLKQAVVKMVQECYTYVDKTPDKETKIKLIETLRT 544
++ FE + W L + I+ LSK+R +K A+ KMV++ +DK P ++ K+KLIETLRT
Sbjct: 93 TKLCFEGQKWDLLMETIMTLSKKRLLIKMAIAKMVRDAVAMIDKMPTEDLKMKLIETLRT 152
Query: 545 ITEGKIYVEVERARLTHILAKIREEEGNVAEAAKIIQELQVETYGSMDKREKVELILEQM 724
+T GKIYVEVERARLT ++ K E EG + EAA ++ ELQVETYGSM+ REKV+ +LEQM
Sbjct: 153 VTAGKIYVEVERARLTSMVVKKLEREGKLDEAATMLLELQVETYGSMEMREKVQYLLEQM 212
Query: 725 RLCLAIKDYVRTQII 769
R L D+VR II
Sbjct: 213 RYSLVRNDFVRATII 227
>Z81136-1|CAB03458.1| 1256|Caenorhabditis elegans Hypothetical
protein W02B8.2 protein.
Length = 1256
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/66 (24%), Positives = 37/66 (56%)
Frame = +2
Query: 530 ETLRTITEGKIYVEVERARLTHILAKIREEEGNVAEAAKIIQELQVETYGSMDKREKVEL 709
+TL+ EG +E+ ++A+IR E ++ K+ QEL++ ++ + +K+E
Sbjct: 444 KTLKETAEGSRRRAIEQCN--EMVARIRGLEASLENQRKVEQELEMVKAENVRQAKKIEF 501
Query: 710 ILEQMR 727
+ E+++
Sbjct: 502 MKEEIQ 507
>U49956-4|AAK77620.1| 1117|Caenorhabditis elegans Variable abnormal
morphology protein1, isoform a protein.
Length = 1117
Score = 27.9 bits (59), Expect = 8.5
Identities = 29/137 (21%), Positives = 57/137 (41%), Gaps = 2/137 (1%)
Frame = +2
Query: 338 STSRILVTVVQIYFEAKNWSALNDHIVVLSKRRSQLKQAVVKMVQECYTYVDKTPDKETK 517
+ R VT NW + I V + RR ++ ++ ++C Y++ KET
Sbjct: 75 ANQRAYVTCNYDMINPSNW-LFSHFIEVKTARRIYIE--LLFNTRDCDAYLNPKSCKETF 131
Query: 518 IKLIETLRTITEGKIYVEVERARLTHILAKIREEEGNVAEAAKIIQELQVETYG-SMDKR 694
++ +T G +E ER ++ + N+ A+ + ET G +D
Sbjct: 132 SVYLKQFKTSRPGSTKIEKER------FSEDIDNWKNIGRLARSNSNMTTETLGMEIDSD 185
Query: 695 EK-VELILEQMRLCLAI 742
K + + E+ +CL++
Sbjct: 186 TKTIRIAFEEQGICLSL 202
>U49956-3|AAK77621.1| 1122|Caenorhabditis elegans Variable abnormal
morphology protein1, isoform b protein.
Length = 1122
Score = 27.9 bits (59), Expect = 8.5
Identities = 29/137 (21%), Positives = 57/137 (41%), Gaps = 2/137 (1%)
Frame = +2
Query: 338 STSRILVTVVQIYFEAKNWSALNDHIVVLSKRRSQLKQAVVKMVQECYTYVDKTPDKETK 517
+ R VT NW + I V + RR ++ ++ ++C Y++ KET
Sbjct: 75 ANQRAYVTCNYDMINPSNW-LFSHFIEVKTARRIYIE--LLFNTRDCDAYLNPKSCKETF 131
Query: 518 IKLIETLRTITEGKIYVEVERARLTHILAKIREEEGNVAEAAKIIQELQVETYG-SMDKR 694
++ +T G +E ER ++ + N+ A+ + ET G +D
Sbjct: 132 SVYLKQFKTSRPGSTKIEKER------FSEDIDNWKNIGRLARSNSNMTTETLGMEIDSD 185
Query: 695 EK-VELILEQMRLCLAI 742
K + + E+ +CL++
Sbjct: 186 TKTIRIAFEEQGICLSL 202
>U23172-2|AAM22069.2| 538|Caenorhabditis elegans Ubiquitin protein
1, isoform c protein.
Length = 538
Score = 27.9 bits (59), Expect = 8.5
Identities = 23/92 (25%), Positives = 46/92 (50%), Gaps = 9/92 (9%)
Frame = +2
Query: 461 KMVQECYTYVDKTPDKETKIKLIETLR--------TITEGKIYVEVERA-RLTHILAKIR 613
K +++ T D KE+ + L+ LR T+T I +EVE + + ++ AKI+
Sbjct: 428 KQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQ 487
Query: 614 EEEGNVAEAAKIIQELQVETYGSMDKREKVEL 709
++EG + ++I ++G+ +R +L
Sbjct: 488 DKEGIPPDQQRLIFAGVYSSFGAPSQRRYADL 519
>AF040269-1|AAC38970.1| 1122|Caenorhabditis elegans Eph receptor
tyrosine kinase protein.
Length = 1122
Score = 27.9 bits (59), Expect = 8.5
Identities = 29/137 (21%), Positives = 57/137 (41%), Gaps = 2/137 (1%)
Frame = +2
Query: 338 STSRILVTVVQIYFEAKNWSALNDHIVVLSKRRSQLKQAVVKMVQECYTYVDKTPDKETK 517
+ R VT NW + I V + RR ++ ++ ++C Y++ KET
Sbjct: 75 ANQRAYVTCNYDMINPSNW-LFSHFIEVKTARRIYIE--LLFNTRDCDAYLNPKSCKETF 131
Query: 518 IKLIETLRTITEGKIYVEVERARLTHILAKIREEEGNVAEAAKIIQELQVETYG-SMDKR 694
++ +T G +E ER ++ + N+ A+ + ET G +D
Sbjct: 132 SVYLKQFKTSRPGSTKIEKER------FSEDIDNWKNIGRLARSNSNMTTETLGMEIDSD 185
Query: 695 EK-VELILEQMRLCLAI 742
K + + E+ +CL++
Sbjct: 186 TKTIRIAFEEQGICLSL 202
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,239,555
Number of Sequences: 27780
Number of extensions: 358905
Number of successful extensions: 1041
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1040
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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