Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30o07
         (793 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe...    31   0.25 
SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyce...    30   0.33 
SPCC4G3.08 |psk1||serine/threonine protein kinase Psk1|Schizosac...    26   5.4  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    26   7.1  
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma...    25   9.4  

>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 520

 Score = 30.7 bits (66), Expect = 0.25
 Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
 Frame = +1

Query: 538 SDDKNRSNPQFS----NSTIMVEHGYNVQELPVLVRTLTDLSEIYDKPIVDTEPSRISND 705
           +++  RS P+ +     ST   E     +E P+        S + D+P  + + S + N 
Sbjct: 220 NEESKRSAPEIALKEKESTSQDESNREAEEAPISTNYSFPSSSLEDQPDKNVQSSAVENK 279

Query: 706 SQNYNLIKSEFS 741
           +++ NL+ S F+
Sbjct: 280 NKHTNLVTSSFN 291


>SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 330

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 20/85 (23%), Positives = 39/85 (45%)
 Frame = +1

Query: 430 EMATAIRTYLKAKKNILSCNANTKASGINSTFRRSFSDDKNRSNPQFSNSTIMVEHGYNV 609
           ++A+     L + K   S NAN+K +   S  R +  +DK R N   +++   ++     
Sbjct: 231 DLASVSSPSLSSYKGAQSPNANSKRTKATSAIRTAAEEDKRRRNTA-ASARFRIKKKLKE 289

Query: 610 QELPVLVRTLTDLSEIYDKPIVDTE 684
           Q+L    + LT+   I +  + + E
Sbjct: 290 QQLERTAKELTEKVAILETRVRELE 314


>SPCC4G3.08 |psk1||serine/threonine protein kinase
           Psk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 436

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +1

Query: 541 DDKNRS-NPQFSNSTIMVEHGYNVQELPVLVRTLTDLSEIYD 663
           D+ N + N   S+   + E GY+ +EL     T+T  S++ D
Sbjct: 10  DNLNENYNSHLSSDDEIAEEGYDFEELEASASTITSSSDLKD 51


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
           Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = -3

Query: 749 SIGLNSDFIKL*FWESLEILEGSVSTIGLS*ISDKSVNVLTS-TGSSCTLYPCSTIIV 579
           ++ ++S +  L  WES   L GS+S      +SD+ +  +     S C      T++V
Sbjct: 175 NLPVSSSYFSLANWESFAFLVGSMSRFNFVMVSDRFIEEIEHLEKSGCDSRQKETVLV 232


>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 630

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +1

Query: 565 QFSNSTIMVEHGY 603
           QF NST++ EHGY
Sbjct: 347 QFPNSTVLNEHGY 359


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,093,489
Number of Sequences: 5004
Number of extensions: 60693
Number of successful extensions: 142
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)