Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30o07
         (793 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0510 + 29637160-29637506,29637714-29637775,29638047-296381...    34   0.15 
01_03_0183 + 13543833-13544051,13544161-13544257,13545616-135457...    28   7.4  

>02_05_0510 + 29637160-29637506,29637714-29637775,29638047-29638161,
            29638296-29638419,29638604-29638684,29639122-29639463,
            29639562-29639728,29639810-29640639,29641103-29642568
          Length = 1177

 Score = 33.9 bits (74), Expect = 0.15
 Identities = 20/66 (30%), Positives = 35/66 (53%)
 Frame = +1

Query: 529  RSFSDDKNRSNPQFSNSTIMVEHGYNVQELPVLVRTLTDLSEIYDKPIVDTEPSRISNDS 708
            RS SDD  +S+  F+ S +++    N  E+P+ + T+T +S    K +   +  +IS  S
Sbjct: 932  RSSSDDDKKSSLAFNESNMLILSARNCTEVPLRLHTMTIVSNDDGKQLCSVQ--QISGIS 989

Query: 709  QNYNLI 726
              Y +I
Sbjct: 990  NEYAVI 995


>01_03_0183 +
           13543833-13544051,13544161-13544257,13545616-13545707,
           13545928-13546047,13546170-13546355,13546439-13546602,
           13546691-13546769,13548256-13548387,13548560-13548687,
           13548785-13549140,13549211-13549221,13549312-13549431,
           13549510-13549637,13552210-13552260,13553105-13553189,
           13553856-13553954,13555260-13555535
          Length = 780

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = +1

Query: 418 LLVLEMATAIRTYLKAKKNILSCNANTKASGINSTFRRSFSDD-KNRSNPQFSNSTIMVE 594
           L  LE    I    +AKKN+ +CN N     ++        +D +N  N +  N  + V 
Sbjct: 430 LTCLEALDNILRVGEAKKNLGACNMNIFVPMVDEADGLDKIEDLQNHDNVEIYNKAVYVL 489

Query: 595 HGYNVQE 615
             Y VQE
Sbjct: 490 ESYWVQE 496


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,848,450
Number of Sequences: 37544
Number of extensions: 320800
Number of successful extensions: 732
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)