Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30o07
         (793 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    28   0.087
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    27   0.26 
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    23   3.3  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   9.9  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   9.9  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   9.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   9.9  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 28.3 bits (60), Expect = 0.087
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = +1

Query: 364 RLISC*EIQILSCILNKELLVLEMATAIRTYLKAKKNILSCNANTKAS 507
           +LI C  +  +  ++N   ++++ A A+  Y   + N+L CN+   AS
Sbjct: 768 QLIICSGLVFVQILINGVWMIIDPAKAMHHYPTREDNLLVCNSYVDAS 815


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 26.6 bits (56), Expect = 0.26
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 643 DLSEIYDKPIVDTEPSRISNDSQNYNLIKSEFS 741
           +L  IY+ P  D E  R+S  + N N I S+ S
Sbjct: 320 NLVYIYNNPFSDVEERRVSKTAMNSNQIVSDNS 352


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = -1

Query: 328 YTSRLKDVLNNTRNQNTG--DSLNYISTLTVDI 236
           + +  + V+   R +N    D  NY+S LTVDI
Sbjct: 157 FNANARSVVEKMRKENGKEFDCHNYMSELTVDI 189


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +2

Query: 491 LIRRLLVSTRHSAGVLVMTRTEVIHNLAILLL 586
           ++  LL+STR+   +L   +  +  N+++LLL
Sbjct: 64  ILDNLLLSTRYDKRLLPPVQGTLTVNVSVLLL 95


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +2

Query: 491 LIRRLLVSTRHSAGVLVMTRTEVIHNLAILLL 586
           ++  LL+STR+   +L   +  +  N+++LLL
Sbjct: 64  ILDNLLLSTRYDKRLLPPVQGTLTVNVSVLLL 95


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +2

Query: 491 LIRRLLVSTRHSAGVLVMTRTEVIHNLAILLL 586
           ++  LL+STR+   +L   +  +  N+++LLL
Sbjct: 64  ILDNLLLSTRYDKRLLPPVQGTLTVNVSVLLL 95


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 5/21 (23%), Positives = 11/21 (52%)
 Frame = -3

Query: 329 IHFTLKGCFKQYKKSKHWRFI 267
           +H+    C + Y + K W ++
Sbjct: 713 LHYETDPCVRYYPRRKEWLYL 733


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,580
Number of Sequences: 438
Number of extensions: 4377
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)