Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte30o04
(324 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR456806-1|CAG33087.1| 196|Homo sapiens RER1 protein. 28 5.6
BT007224-1|AAP35888.1| 196|Homo sapiens similar to S. cerevisia... 28 5.6
BC004965-1|AAH04965.1| 196|Homo sapiens RER1 retention in endop... 28 5.6
AL513477-5|CAI22607.1| 187|Homo sapiens RER1 retention in endop... 28 5.6
AL513477-4|CAI22606.1| 158|Homo sapiens RER1 retention in endop... 28 5.6
AL513477-3|CAI22605.1| 117|Homo sapiens RER1 retention in endop... 28 5.6
AL513477-2|CAI22604.1| 196|Homo sapiens RER1 retention in endop... 28 5.6
AJ001421-1|CAA04754.1| 196|Homo sapiens Rer1 protein protein. 28 5.6
AF157324-1|AAF67490.1| 214|Homo sapiens RER1 protein protein. 28 5.6
AF091071-1|AAC72940.1| 206|Homo sapiens Rer1 protein. 28 5.6
>CR456806-1|CAG33087.1| 196|Homo sapiens RER1 protein.
Length = 196
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +1
Query: 208 MMDGNDLSSXVTRK-GXLXQGWTRISQVYQSTLDRWTP 318
M +G+ + V K + + +TR+ Q+YQS LD+ TP
Sbjct: 1 MSEGDSVGESVHGKPSVVYRFFTRLGQIYQSWLDKSTP 38
>BT007224-1|AAP35888.1| 196|Homo sapiens similar to S. cerevisiae
RER1 protein.
Length = 196
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +1
Query: 208 MMDGNDLSSXVTRK-GXLXQGWTRISQVYQSTLDRWTP 318
M +G+ + V K + + +TR+ Q+YQS LD+ TP
Sbjct: 1 MSEGDSVGESVHGKPSVVYRFFTRLGQIYQSWLDKSTP 38
>BC004965-1|AAH04965.1| 196|Homo sapiens RER1 retention in
endoplasmic reticulum 1 homolog (S. cerevisiae) protein.
Length = 196
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +1
Query: 208 MMDGNDLSSXVTRK-GXLXQGWTRISQVYQSTLDRWTP 318
M +G+ + V K + + +TR+ Q+YQS LD+ TP
Sbjct: 1 MSEGDSVGESVHGKPSVVYRFFTRLGQIYQSWLDKSTP 38
>AL513477-5|CAI22607.1| 187|Homo sapiens RER1 retention in
endoplasmic reticulum 1 homolog; alpha polypeptide
protein.
Length = 187
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +1
Query: 208 MMDGNDLSSXVTRK-GXLXQGWTRISQVYQSTLDRWTP 318
M +G+ + V K + + +TR+ Q+YQS LD+ TP
Sbjct: 1 MSEGDSVGESVHGKPSVVYRFFTRLGQIYQSWLDKSTP 38
>AL513477-4|CAI22606.1| 158|Homo sapiens RER1 retention in
endoplasmic reticulum 1 homologdogene protein.
Length = 158
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +1
Query: 208 MMDGNDLSSXVTRK-GXLXQGWTRISQVYQSTLDRWTP 318
M +G+ + V K + + +TR+ Q+YQS LD+ TP
Sbjct: 1 MSEGDSVGESVHGKPSVVYRFFTRLGQIYQSWLDKSTP 38
>AL513477-3|CAI22605.1| 117|Homo sapiens RER1 retention in
endoplasmic reticulum 1 homolog, 11, 17.3kDa protein.
Length = 117
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +1
Query: 208 MMDGNDLSSXVTRK-GXLXQGWTRISQVYQSTLDRWTP 318
M +G+ + V K + + +TR+ Q+YQS LD+ TP
Sbjct: 1 MSEGDSVGESVHGKPSVVYRFFTRLGQIYQSWLDKSTP 38
>AL513477-2|CAI22604.1| 196|Homo sapiens RER1 retention in
endoplasmic reticulum 1 homologquitin protein ligase 1
protein.
Length = 196
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +1
Query: 208 MMDGNDLSSXVTRK-GXLXQGWTRISQVYQSTLDRWTP 318
M +G+ + V K + + +TR+ Q+YQS LD+ TP
Sbjct: 1 MSEGDSVGESVHGKPSVVYRFFTRLGQIYQSWLDKSTP 38
>AJ001421-1|CAA04754.1| 196|Homo sapiens Rer1 protein protein.
Length = 196
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +1
Query: 208 MMDGNDLSSXVTRK-GXLXQGWTRISQVYQSTLDRWTP 318
M +G+ + V K + + +TR+ Q+YQS LD+ TP
Sbjct: 1 MSEGDSVGESVHGKPSVVYRFFTRLGQIYQSWLDKSTP 38
>AF157324-1|AAF67490.1| 214|Homo sapiens RER1 protein protein.
Length = 214
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +1
Query: 208 MMDGNDLSSXVTRK-GXLXQGWTRISQVYQSTLDRWTP 318
M +G+ + V K + + +TR+ Q+YQS LD+ TP
Sbjct: 1 MSEGDSVGESVHGKPSVVYRFFTRLGQIYQSWLDKSTP 38
>AF091071-1|AAC72940.1| 206|Homo sapiens Rer1 protein.
Length = 206
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +1
Query: 208 MMDGNDLSSXVTRK-GXLXQGWTRISQVYQSTLDRWTP 318
M +G+ + V K + + +TR+ Q+YQS LD+ TP
Sbjct: 1 MSEGDSVGESVHGKPSVVYRFFTRLGQIYQSWLDKSTP 38
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,812,370
Number of Sequences: 237096
Number of extensions: 308335
Number of successful extensions: 147
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 76,859,062
effective HSP length: 79
effective length of database: 58,128,478
effective search space used: 1627597384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -