Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30o02
         (744 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27D7.06 |||electron transfer flavoprotein alpha subunit|Schi...   134   2e-32
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   3.7  
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc...    26   6.5  
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    26   6.5  
SPAC1687.23c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   6.5  
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    25   8.6  

>SPAC27D7.06 |||electron transfer flavoprotein alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 341

 Score =  134 bits (323), Expect = 2e-32
 Identities = 71/195 (36%), Positives = 111/195 (56%), Gaps = 1/195 (0%)
 Frame = +3

Query: 162 STLVLAEHNNEVLSPATQNTLNAAKKIGGDVSVLVAGTKCGPAAESIAKA-NGISKVLVA 338
           S L L EH    LSPA+ + + AAK+ GGDV   V G      ++ +AK+ N + KV+  
Sbjct: 29  SVLTLLEHQGGNLSPASLSAVEAAKRTGGDVFGFVIGKDSSQISQKVAKSVNDLKKVIYV 88

Query: 339 ESDVFKGFTAETLTPLILATQKQFKFTHILAPATAFGKTVLPRVAAKLDVSPITDIIGIK 518
           E+  ++    + +  ++    K+ + +H+ +  +  GK V+PR+AA  DV  I+DIIG+ 
Sbjct: 89  ENPSYEHNIPDQIANVLFENVKKNEISHVFSAHSTVGKGVMPRLAAMFDVMQISDIIGVV 148

Query: 519 DANTFVRTIYAGNAILTLEAKDPIKVITVRGTAFPAEPLEGGSAAIDKAPEGDYKTDLVE 698
            A+TFVR  YAGN  +T+  KDPIK++TVR +AF A P  G  AA            L E
Sbjct: 149 SADTFVRPTYAGNVNVTVSTKDPIKIVTVRASAFDAAPSSGEGAATVVEGIDPKPAALQE 208

Query: 699 FLKQELTKSDRPELT 743
           ++ + + K+ RP+L+
Sbjct: 209 WVSENIIKNARPDLS 223


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 41/191 (21%), Positives = 76/191 (39%), Gaps = 3/191 (1%)
 Frame = -3

Query: 697  STRSVL*SPSGALSIAADPPSNGSAGNAVPRTVMTLIGSLASRVNIALPA*IVLTKVLAS 518
            +T S   S + ++++A+   S+ S+      T  +      + +  +L + I    V  S
Sbjct: 1031 ATASATDSSTSSIAVASVTGSSTSSVATASATDSSTSSVATASITGSLSSSIATASVTGS 1090

Query: 517  LIPMISVIGDTSSLAATRGSTVFPKAVAGAKI*VNLNCFCVAKIRGVRVSAVKPLKTSLS 338
                ++ +  TSS+  T  ST+   A + A +  +              S+     T+  
Sbjct: 1091 PTSSVTAVSSTSSVEGTASSTI-AAAASAATLSSDAASGSSTVTSSATASSSSSAATTAD 1149

Query: 337  ATKTLDIP---FALAMDSAAGPHLVPATSTETSPPIFLAAFNVFWVAGDSTSLLCSASTK 167
            ++ T D P   F   +D+ AG   V A S+ + P  F       W   D  S++  ++  
Sbjct: 1150 SSVTTDTPSNDFNANVDT-AGLWYVSALSSYSVPAGFA------WTTIDGFSVVMPSANA 1202

Query: 166  VLCKRRSCPDK 134
               K+RS P K
Sbjct: 1203 Y--KKRSLPIK 1211


>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
           Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 17/59 (28%), Positives = 29/59 (49%)
 Frame = -3

Query: 736 SGLSDLVNSCFKNSTRSVL*SPSGALSIAADPPSNGSAGNAVPRTVMTLIGSLASRVNI 560
           SGL +L N+C+ NST  +L     A+   +D  S  ++   +     TL+ S+ S   +
Sbjct: 100 SGLINLGNTCYMNSTVQML----RAIPELSDAVSQFNSSGGLVAEYRTLLNSMQSNAPV 154


>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
            Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = -2

Query: 659  INCCRPSLQWLCRECCATNSDDLDRIFGLKG*YSVTSI---NCSHKGISILDTNDI 501
            +NC   +  W+CR+C +  S  +     + G  S + +   +C+   + + DT+DI
Sbjct: 1131 MNCSDYAQSWVCRDCGSIIS--IMSTISMNGVGSASEVRCRSCAKPALGLEDTSDI 1184


>SPAC1687.23c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 104

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 10/39 (25%), Positives = 23/39 (58%)
 Frame = -1

Query: 300 WILQQVHIWFQPQALRHHLQFSWQHSMYFGLLEIVPHCC 184
           WIL++ +I+F+   ++   +F + +++   LL    +CC
Sbjct: 2   WILEKKNIFFKIIHIKSSRKFDFSNAIRIVLLPFSSNCC 40


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -3

Query: 259 TETSPPIFLAAFNVFWVAGDSTSLLCSASTKV 164
           T T P +FLA   +F   G+    LCS    V
Sbjct: 395 TPTYPELFLAKAKIFLCMGEIEEALCSFKRSV 426


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,040,167
Number of Sequences: 5004
Number of extensions: 62785
Number of successful extensions: 195
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)