Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte30o02
(744 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81130-12|CAB61027.1| 332|Caenorhabditis elegans Hypothetical p... 211 3e-55
Z79695-8|CAB01967.2| 332|Caenorhabditis elegans Hypothetical pr... 211 3e-55
Z49911-2|CAA90130.1| 681|Caenorhabditis elegans Hypothetical pr... 34 0.093
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l... 31 1.1
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p... 31 1.1
U41038-3|AAK29708.3| 623|Caenorhabditis elegans Cadherin family... 29 4.6
AC006780-1|AAF60644.2| 89|Caenorhabditis elegans Hypothetical ... 28 8.0
>Z81130-12|CAB61027.1| 332|Caenorhabditis elegans Hypothetical
protein F27D4.1 protein.
Length = 332
Score = 211 bits (516), Expect = 3e-55
Identities = 105/197 (53%), Positives = 142/197 (72%), Gaps = 1/197 (0%)
Frame = +3
Query: 153 RLQSTLVLAEHNNEVLSPATQNTLNAAKKIGGDVSVLVAGTKCGPAAESIAKANGISKVL 332
RL STLV+AEH+ L+P T N + AA K+G +VSVLV G AE +AK NG+ +VL
Sbjct: 19 RLNSTLVVAEHDETKLAPITLNAITAASKLGNEVSVLVTGANATKVAEQVAKVNGVKRVL 78
Query: 333 VAESDVFKGFTAETLTPLILATQKQFKFTHILAPATAFGKTVLPRVAAKLDVSPITDIIG 512
VA+ + K E + P+ILA+QKQF FT I A ++AFG+ V+PRVAAKLDVS I+D+
Sbjct: 79 VAQDEKLKNNLPERVAPVILASQKQFNFTAITAGSSAFGRGVIPRVAAKLDVSSISDVTE 138
Query: 513 IKDANTFVRTIYAGNAILTLEAKDPIKVITVRGTAF-PAEPLEGGSAAIDKAPEGDYKTD 689
+ A++F RT+YAGNA+ +++ PIK++T RGT+F PA+ EGGS A++ AP D KTD
Sbjct: 139 VHSADSFTRTLYAGNAVKKVKSTAPIKLLTFRGTSFEPAK--EGGSGAVENAPSADIKTD 196
Query: 690 LVEFLKQELTKSDRPEL 740
L EFL QEL+KS+RP+L
Sbjct: 197 LSEFLGQELSKSERPDL 213
>Z79695-8|CAB01967.2| 332|Caenorhabditis elegans Hypothetical
protein F27D4.1 protein.
Length = 332
Score = 211 bits (516), Expect = 3e-55
Identities = 105/197 (53%), Positives = 142/197 (72%), Gaps = 1/197 (0%)
Frame = +3
Query: 153 RLQSTLVLAEHNNEVLSPATQNTLNAAKKIGGDVSVLVAGTKCGPAAESIAKANGISKVL 332
RL STLV+AEH+ L+P T N + AA K+G +VSVLV G AE +AK NG+ +VL
Sbjct: 19 RLNSTLVVAEHDETKLAPITLNAITAASKLGNEVSVLVTGANATKVAEQVAKVNGVKRVL 78
Query: 333 VAESDVFKGFTAETLTPLILATQKQFKFTHILAPATAFGKTVLPRVAAKLDVSPITDIIG 512
VA+ + K E + P+ILA+QKQF FT I A ++AFG+ V+PRVAAKLDVS I+D+
Sbjct: 79 VAQDEKLKNNLPERVAPVILASQKQFNFTAITAGSSAFGRGVIPRVAAKLDVSSISDVTE 138
Query: 513 IKDANTFVRTIYAGNAILTLEAKDPIKVITVRGTAF-PAEPLEGGSAAIDKAPEGDYKTD 689
+ A++F RT+YAGNA+ +++ PIK++T RGT+F PA+ EGGS A++ AP D KTD
Sbjct: 139 VHSADSFTRTLYAGNAVKKVKSTAPIKLLTFRGTSFEPAK--EGGSGAVENAPSADIKTD 196
Query: 690 LVEFLKQELTKSDRPEL 740
L EFL QEL+KS+RP+L
Sbjct: 197 LSEFLGQELSKSERPDL 213
>Z49911-2|CAA90130.1| 681|Caenorhabditis elegans Hypothetical
protein M28.2 protein.
Length = 681
Score = 34.3 bits (75), Expect = 0.093
Identities = 24/93 (25%), Positives = 42/93 (45%)
Frame = +3
Query: 66 IKTDFLNKILLIKMFAPNSRHLFLSGQLRRLQSTLVLAEHNNEVLSPATQNTLNAAKKIG 245
+K+ + I+ F N + G R+ T V +++ +T+ T N K+
Sbjct: 200 VKSSTSQALAEIRSFIKNYAEDVIDGTTTRVGLTAV-NNFDSDAFKRSTEVTYNKGVKLI 258
Query: 246 GDVSVLVAGTKCGPAAESIAKANGISKVLVAES 344
GD+ L K GP + A AN + KV++ +S
Sbjct: 259 GDLQTLQMSPKTGPDCRNTA-ANLLEKVIIIQS 290
>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
lineage protein 13 protein.
Length = 2248
Score = 30.7 bits (66), Expect = 1.1
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Frame = -2
Query: 632 WLCRECCAT--NSDDLDRIFGLKG*YSVTSINCSHKGISILDTNDISYW*HIKLGRNSWQ 459
WLCR CC N + + G +T I+CS GI+ N + H+K +
Sbjct: 1601 WLCRNCCVVFENQPKYQKHMAIHGDTCLTCIHCS--GIAF---NHTAIQNHMK-SHEEKK 1654
Query: 458 HRLSESSCWC*DMSEFELF 402
R S +C C S+ LF
Sbjct: 1655 VRYSCGTCLCTFASDLALF 1673
>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
protein LIN-13 protein.
Length = 2248
Score = 30.7 bits (66), Expect = 1.1
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Frame = -2
Query: 632 WLCRECCAT--NSDDLDRIFGLKG*YSVTSINCSHKGISILDTNDISYW*HIKLGRNSWQ 459
WLCR CC N + + G +T I+CS GI+ N + H+K +
Sbjct: 1601 WLCRNCCVVFENQPKYQKHMAIHGDTCLTCIHCS--GIAF---NHTAIQNHMK-SHEEKK 1654
Query: 458 HRLSESSCWC*DMSEFELF 402
R S +C C S+ LF
Sbjct: 1655 VRYSCGTCLCTFASDLALF 1673
>U41038-3|AAK29708.3| 623|Caenorhabditis elegans Cadherin family
protein 9 protein.
Length = 623
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = +3
Query: 414 FTHILAPATAFGKTVLPRVAAKLDVSPITDIIGIKDANTFVRTIYAGNAILTLEAKDP 587
++ ++P T G TV+ VA + +P+T + + D NT +GN +L + + P
Sbjct: 339 YSTTISPTTPIGSTVITVVANSENNTPLTYSL-LADTNTVSIDEVSGNVVLRKKLEKP 395
>AC006780-1|AAF60644.2| 89|Caenorhabditis elegans Hypothetical
protein Y47D9A.4 protein.
Length = 89
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 639 GGSAAIDKAPEGDYKTDLVEFLKQELTKSDRPELT 743
GGS I + E D D + + + L K D+PE T
Sbjct: 51 GGSRGIKSSKEPDSTDDAFKEMAKRLAKKDKPEKT 85
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,877,775
Number of Sequences: 27780
Number of extensions: 359865
Number of successful extensions: 1092
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1090
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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