Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30n24
         (690 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1564 + 34449233-34449412,34449967-34450470                       58   5e-09
05_01_0602 + 5394341-5394520,5395083-5395586                           57   2e-08
07_03_0451 + 18340166-18340533,18340576-18341006,18343057-183431...    30   2.0  
02_02_0350 + 9239138-9240218,9240755-9240906,9241392-9241457,924...    28   8.0  

>04_04_1564 + 34449233-34449412,34449967-34450470
          Length = 227

 Score = 58.4 bits (135), Expect = 5e-09
 Identities = 23/72 (31%), Positives = 41/72 (56%)
 Frame = +2

Query: 452 QVTVKWVEGIQTKLPMCIGGGIWGAARLRPKHRQMYLKYYLPWAIRTGNNAKFLQGIYFE 631
           +  +K +E  Q  LPMC+   + G+AR   K R ++ ++Y PWA + G     L  +Y+E
Sbjct: 141 ETALKVIEFEQMFLPMCMLSVVGGSARFNEKQRTLFFQHYFPWASKAGLKCTDLMSVYYE 200

Query: 632 KRWEQDIDDFHK 667
           K + +D+D+  +
Sbjct: 201 KHFHEDLDEVRR 212


>05_01_0602 + 5394341-5394520,5395083-5395586
          Length = 227

 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 22/72 (30%), Positives = 41/72 (56%)
 Frame = +2

Query: 452 QVTVKWVEGIQTKLPMCIGGGIWGAARLRPKHRQMYLKYYLPWAIRTGNNAKFLQGIYFE 631
           +  +K +E  Q  LPMC+   + G+AR   K R ++ ++Y PWA + G     L  +Y+E
Sbjct: 141 ETALKVIEFEQMFLPMCMLSVVGGSARFNEKQRTLFFQHYFPWASKAGLKCTDLMSVYYE 200

Query: 632 KRWEQDIDDFHK 667
           K + +D+++  +
Sbjct: 201 KHFHEDLEEVRR 212


>07_03_0451 +
           18340166-18340533,18340576-18341006,18343057-18343184,
           18343329-18343958,18344761-18345480
          Length = 758

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 9/15 (60%), Positives = 14/15 (93%)
 Frame = +3

Query: 354 YLNIFLNFWEFMILF 398
           ++N+FLNFW F+I+F
Sbjct: 731 FVNLFLNFWSFIIIF 745


>02_02_0350 +
           9239138-9240218,9240755-9240906,9241392-9241457,
           9242715-9242951
          Length = 511

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +2

Query: 467 WVEGIQTKLPMCIGGGIWGAARL 535
           W E  QT  PMC+ G   G ARL
Sbjct: 459 WAECAQTNQPMCVFGVAQGPARL 481


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,206,461
Number of Sequences: 37544
Number of extensions: 305774
Number of successful extensions: 674
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)