Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte30n21
(689 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 32 0.068
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 31 0.21
SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces p... 29 0.48
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe... 29 0.84
SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein s... 28 1.1
SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredox... 27 1.9
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|... 27 1.9
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 27 3.4
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei... 26 4.5
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 26 5.9
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei... 26 5.9
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 26 5.9
SPAC869.08 |pcm2||protein-L-isoaspartate O-methyltransferase |Sc... 25 7.8
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo... 25 7.8
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 32.3 bits (70), Expect = 0.068
Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 5/101 (4%)
Frame = +1
Query: 148 NVFHVEHHSRVPEYHLVQLTHHLARRNIPTSHPANSNSADSGKTPHLKTEKVTKGGYKAP 327
+V ++E + V HLV + ++P S PA+ + +TP + T + G P
Sbjct: 183 HVGYLEMYQYVIARHLVAICKQYNLIHLPRSLPADVIESAKSETPAMNTN--IEQGVTQP 240
Query: 328 SLLNDEMF-----VEAKKRIEDVDIMGDPNSTVSVDFKVQS 435
SL+N E + + K + +I D N+ +VD K S
Sbjct: 241 SLVNTEQLSHQQSISSTKSSKLDEISADNNAQSAVDNKYSS 281
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 30.7 bits (66), Expect = 0.21
Identities = 19/70 (27%), Positives = 33/70 (47%)
Frame = +1
Query: 355 EAKKRIEDVDIMGDPNSTVSVDFKVQSSEFGDSESLSDKEHSAESQEDGVHKIDLEAFGR 534
E ++ E+ +S+ S SSE GDS+S SD E + S+++ K + + R
Sbjct: 189 EVVEKTEEKKEGSSESSSDSESSSDSSSESGDSDSSSDSESESSSEDEKKRKAEPASEER 248
Query: 535 QLKLVLKKQE 564
K+ Q+
Sbjct: 249 PAKITKPSQD 258
>SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 608
Score = 29.5 bits (63), Expect = 0.48
Identities = 20/81 (24%), Positives = 35/81 (43%)
Frame = +1
Query: 283 HLKTEKVTKGGYKAPSLLNDEMFVEAKKRIEDVDIMGDPNSTVSVDFKVQSSEFGDSESL 462
H + KVT+ K ++ E+ + + + + + + + EF ++E+L
Sbjct: 19 HNSSHKVTENAKKRKHSKEKPQNSRKRQLAEEKKSLFENSDSENEKDLIDADEFEEAETL 78
Query: 463 SDKEHSAESQEDGVHKIDLEA 525
SD EH E Q ID EA
Sbjct: 79 SDLEHDEEPQTFADEFIDDEA 99
>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 716
Score = 28.7 bits (61), Expect = 0.84
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Frame = +1
Query: 502 VHKIDLEAFGRQLKLVLKKQ-EGLIKKDGLKV-WKA-LKNETQPHGVDYEEMITEDDEEF 672
V +I+ +A G+ L L+ +G KK KV W A +++T VD++ +IT+D E
Sbjct: 587 VREINRDASGKVTSLKLELHLDGDFKKTEKKVTWLADTEDKTPVDLVDFDYLITKDKLEE 646
Query: 673 GDLYQ 687
G+ Y+
Sbjct: 647 GENYK 651
>SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein
subunit L40|Schizosaccharomyces pombe|chr 1|||Manual
Length = 279
Score = 28.3 bits (60), Expect = 1.1
Identities = 19/57 (33%), Positives = 25/57 (43%)
Frame = +3
Query: 75 HRNTKVLEGISFFDPRAHDNR*ASERLPCRAPQQSTRVPPGSAHTSLGQKEYTHFSP 245
H TK+ E ++ DP D++ A LP P + RVP H G Y H P
Sbjct: 28 HMRTKIREHLNKSDPTVKDDKSAKPELPFGKP--ADRVP--FWHIFKGDYVYVHQGP 80
>SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredoxin
Etp1/ cytochrome oxidase cofactor Cox15,
fusion|Schizosaccharomyces pombe|chr 1|||Manual
Length = 631
Score = 27.5 bits (58), Expect = 1.9
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 115 IHEHMTIDELRNVFHVEHHSRV 180
++ HMT+DE +N+F E RV
Sbjct: 162 LNSHMTVDEFKNIFFWEWFHRV 183
>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
Snf21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1199
Score = 27.5 bits (58), Expect = 1.9
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = +1
Query: 424 KVQSSEFGDSESLSDKEHSAESQEDGVHKIDLEAFGRQLKLVLKKQEGLIKKDGLKVWK 600
KVQ S+FG+S D + ++D KID ++ V+ +Q ++ LK ++
Sbjct: 365 KVQQSQFGESAYDEDMDRRMNPEDD--RKIDYYNVAHNIREVVTEQPSILVGGKLKEYQ 421
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 26.6 bits (56), Expect = 3.4
Identities = 23/84 (27%), Positives = 31/84 (36%)
Frame = +1
Query: 247 ANSNSADSGKTPHLKTEKVTKGGYKAPSLLNDEMFVEAKKRIEDVDIMGDPNSTVSVDFK 426
A+S+S SG + ++ S ND + E D +S+ S
Sbjct: 96 AHSSSEASGSGSSSDESDSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSES 155
Query: 427 VQSSEFGDSESLSDKEHSAESQED 498
SSE DS S S S S ED
Sbjct: 156 ESSSEGSDSSSSSSSSESESSSED 179
Score = 26.6 bits (56), Expect = 3.4
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +1
Query: 394 DPNSTVSVDFKVQSS-EFGDSESLSDKEHSAESQEDGVHKIDLEAFG 531
D +S+ S D + +SS E DS S S S+ S EDG D G
Sbjct: 281 DDSSSDSSDSESESSSEDSDSTSSSSDSDSSSSSEDGNSNTDTTTSG 327
>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 945
Score = 26.2 bits (55), Expect = 4.5
Identities = 27/118 (22%), Positives = 50/118 (42%), Gaps = 1/118 (0%)
Frame = +1
Query: 166 HHSRVPEYHLVQLTHHLARRNIPTSHPANSNSADSGKTPHLKTEKVTKGGYKAPSLLND- 342
H+ VPE +QL A+ N T +A++ + + KVT+ + SLL++
Sbjct: 292 HNFSVPEIR-IQLPGD-AKENKETRTSVEITAAENAQAA-VTLRKVTR---QLGSLLHEL 345
Query: 343 EMFVEAKKRIEDVDIMGDPNSTVSVDFKVQSSEFGDSESLSDKEHSAESQEDGVHKID 516
E F++ + ++ P+S +S+D + + + S E G H D
Sbjct: 346 ECFIQHHEYTKERTAQSSPSSRMSMDSNFEQHWYDAEDYESTTSQLNHYSESGAHAAD 403
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.8 bits (54), Expect = 5.9
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 250 NSNSADSGKTPHLKTEKVT 306
N N DS KTPH + +K+T
Sbjct: 947 NDNLIDSIKTPHTELQKIT 965
>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 968
Score = 25.8 bits (54), Expect = 5.9
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = +2
Query: 197 FSSHITWPEGIYPLLTQRTRTAPIQE 274
F+ H W YP + TRT P E
Sbjct: 746 FTKHNNWEASTYPSAPKNTRTYPTAE 771
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 25.8 bits (54), Expect = 5.9
Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +1
Query: 493 EDGVHKIDLEAFGRQ--LKLVLKKQEGLIKKDGLKVWKALK 609
E+ ++ +L FG Q LKLVL + +K+ K+W++++
Sbjct: 2205 EEATNEWELNYFGLQSWLKLVLADPKKSCEKEFSKIWESMR 2245
>SPAC869.08 |pcm2||protein-L-isoaspartate O-methyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 230
Score = 25.4 bits (53), Expect = 7.8
Identities = 19/81 (23%), Positives = 35/81 (43%)
Frame = +1
Query: 337 NDEMFVEAKKRIEDVDIMGDPNSTVSVDFKVQSSEFGDSESLSDKEHSAESQEDGVHKID 516
+DE+ +E K +GD S D K + G S S ++ + + G I
Sbjct: 129 HDEVLMEMYKEKRLQINVGDGRMGTSEDEKFDAIHVGASASELPQKLVDQLKSPGKILIP 188
Query: 517 LEAFGRQLKLVLKKQEGLIKK 579
+ + + + L+ K ++G I K
Sbjct: 189 IGTYSQNIYLIEKNEQGKISK 209
>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 25.4 bits (53), Expect = 7.8
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +1
Query: 232 PTSHPANSNSADSGKTPHLKTEKVTKGGYKAPSLLNDEM 348
PT+ P N S TP+L + K T YKA + L +++
Sbjct: 191 PTT-PWRRNGFRSKTTPNLNSGKETPSSYKASARLMEQL 228
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.132 0.382
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,806,159
Number of Sequences: 5004
Number of extensions: 58584
Number of successful extensions: 184
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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