Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30n21
         (689 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    25   0.90 
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    25   0.90 
AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced prot...    25   0.90 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   2.1  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   6.3  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    22   6.3  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    22   6.3  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    22   6.3  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   8.4  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 24.6 bits (51), Expect = 0.90
 Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = +1

Query: 319 KAPSLLNDEMFVEAKKRIE-DVDIMGDPNSTVSVDFKVQSSEFGDSESLSDKEHSAESQE 495
           K+PSL +   ++   + I   + +    +  + VD++ +  EFGDS+    +    E   
Sbjct: 227 KSPSLTSLNAYLIKNQTITCPIKVSWRADGQIMVDYEDEFDEFGDSKCSLCQRRFEEQGN 286

Query: 496 DGVHKIDL 519
               K+DL
Sbjct: 287 YSCLKVDL 294


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 24.6 bits (51), Expect = 0.90
 Identities = 12/48 (25%), Positives = 25/48 (52%)
 Frame = +1

Query: 415 VDFKVQSSEFGDSESLSDKEHSAESQEDGVHKIDLEAFGRQLKLVLKK 558
           V+ +++ S+ G S ++S      + +   VH + +     QLK ++KK
Sbjct: 428 VEHRIRHSQIGISRAMSALRILEKHELANVHPVGINPGKMQLKNIIKK 475


>AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 36

 Score = 24.6 bits (51), Expect = 0.90
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +1

Query: 187 YHLVQLTHHLARRNIPT 237
           YH+ QL HHL+  N+PT
Sbjct: 5   YHVAQLPHHLS-PNMPT 20


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 233 PLLTQRTRTAPIQERPPI*KPKKSLKVGTRPPLCSMTRC 349
           P+ T+R  T   +ER P   PK+  K+ + P L     C
Sbjct: 622 PVTTKRDGTQETEERLPPLPPKRIRKMPSMPLLPRPISC 660


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +3

Query: 267 FRKDPPFKNRKSH*RWVQGPLFAQ 338
           F   PP      +  WV GPLF Q
Sbjct: 103 FCMSPPMVINCYYETWVLGPLFCQ 126


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 144 KLIYCHVLVDQKKIFLPKPWCYGGF 70
           KL Y + +++ ++I +P P  YG F
Sbjct: 114 KLYYKNYIINIEQIPVPVPVYYGNF 138


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +3

Query: 267 FRKDPPFKNRKSH*RWVQGPLFAQ 338
           F   PP      +  WV GPLF Q
Sbjct: 69  FCMSPPMVINCYYETWVLGPLFCQ 92


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 144 KLIYCHVLVDQKKIFLPKPWCYGGF 70
           KL Y + +++ ++I +P P  YG F
Sbjct: 339 KLYYKNYIINIEQIPVPVPVYYGNF 363


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 416 TLTVLLGSPMISTSSIRFFASTNISSLSKEGALYPP 309
           TL   + SP+ S SS     S  ++SL++   + PP
Sbjct: 481 TLDEAVKSPLGSVSSTESTCSGEVASLTEYHHVAPP 516


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.315    0.132    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,724
Number of Sequences: 438
Number of extensions: 3647
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)