Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30n19
         (673 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.02 |||adenine deaminase |Schizosaccharomyces pombe|chr ...    41   2e-04
SPAC1705.03c ||SPAC23H4.19|conserved fungal family|Schizosacchar...    32   0.065
SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces po...    29   0.81 
SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyc...    27   1.9  
SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|...    27   1.9  
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po...    27   2.5  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    26   4.3  
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    25   9.9  
SPAC2E1P5.03 |||DNAJ domain protein Erj5|Schizosaccharomyces pom...    25   9.9  
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c...    25   9.9  

>SPBC1683.02 |||adenine deaminase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 339

 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 45/205 (21%), Positives = 81/205 (39%), Gaps = 2/205 (0%)
 Frame = +2

Query: 50  DLNFFCKELPKIELHAHLNGSLSQATMLQLQRYYVDAGISDKTNTFLDEFQIGAGDTRNL 229
           D+  F ++LPK ELH HL G+L     L+L        I  K ++ ++E +  + +  +L
Sbjct: 3   DIERFIEKLPKAELHLHLEGTLEAELKLKLSH---RNKIPLKQSS-IEEIK-ESYNFHDL 57

Query: 230 SECFQVFSIAHSLTSTSEALVMATELTLQEFQEDGCCYIELRSTPR--DTQYITKKQYID 403
           +   +V+     L    +         L++       Y E+   P+    + I+ +  I 
Sbjct: 58  ASFLEVYYEGVELLLHEQDFYDLCYQYLRKAASQNVVYAEMFFDPQLHTRRGISFETVIK 117

Query: 404 SIIRAMEKPXXXXXXXXXXXXXXXRASQLQEVEEIADIAIERHKIHPDTVVGIELSGNPA 583
            +IRA +                 R    +  EE  + ++     +   ++GI L  N  
Sbjct: 118 GLIRARDDAMRDFHIYSQLIMCFIREMSFENAEETLNASLP----YKSEIIGIGLDSNEE 173

Query: 584 VGNFGDFIPALNRARQSGLKVTLHC 658
                 F+    RARQ G ++T HC
Sbjct: 174 NNPPIKFLKVFQRARQLGYRLTCHC 198


>SPAC1705.03c ||SPAC23H4.19|conserved fungal
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 32.3 bits (70), Expect = 0.065
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
 Frame = +2

Query: 107 GSLSQATMLQLQRYYVDAGISDKTNTFLDEFQIGAGDTRNLSE--CFQVFSIAHSLTSTS 280
           GSL+ A +  LQ    +AG+SD  +  +D+ Q+ A D  +L     FQV +  +    T 
Sbjct: 117 GSLNLAVLPNLQELQFNAGLSDSDSVVIDDTQLQAIDGISLDSVTTFQVTNNRYIQEITM 176

Query: 281 EALVMATELTL 313
           E L  A  + +
Sbjct: 177 EGLESAQNIQI 187


>SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 367

 Score = 28.7 bits (61), Expect = 0.81
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 62  FCKELPKIELHAHLNGSLSQATMLQLQR 145
           F ++LPK E H HL G LS   + +L +
Sbjct: 9   FIRKLPKCEHHVHLEGCLSPDLVFRLAK 36


>SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 126 LCFSFKGIMSTLAYLIKQTHFSTN 197
           LC SFK I  T AY ++  H ++N
Sbjct: 13  LCHSFKSIPRTSAYAVRFAHHTSN 36


>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 532

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +2

Query: 86  ELHAHLNGSLSQATMLQLQRYYVDAGISDKTNTFLDEFQIGAGDTRNLSE 235
           E+  HL G++    + Q    Y++  +SD T    D    GA D  +L E
Sbjct: 468 EVTEHLRGNMENIEIGQFMEIYLNVSLSDVTEKLKDAPIHGAPDRPSLVE 517


>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 594

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 11/50 (22%), Positives = 28/50 (56%)
 Frame = +2

Query: 278 SEALVMATELTLQEFQEDGCCYIELRSTPRDTQYITKKQYIDSIIRAMEK 427
           SE  +   E +L+ F+E+G  YI++        Y+  K++ +++++  ++
Sbjct: 141 SECHLRCAERSLKVFEENGGIYIKIGQHLSAMGYVIPKEWTNTMVKLQDR 190


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
           Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 22/96 (22%), Positives = 42/96 (43%), Gaps = 5/96 (5%)
 Frame = +2

Query: 50  DLNFFCKELPKIELHAHLNGSLSQATMLQLQRYYVDAGISDKTNTFLDEFQIGA-----G 214
           DLN +  E+   E+  +++ S    T   +  YY         ++   ++  G       
Sbjct: 484 DLNPYNVEVDIPEISLNISDS-KIPTSAYMPSYYSAVIFPSSISSIFQKYNYGGKYWCPS 542

Query: 215 DTRNLSECFQVFSIAHSLTSTSEALVMATELTLQEF 322
            + +  + F+ FS+A S+TST E  + +T    Q+F
Sbjct: 543 PSLSTEDLFESFSVAESVTSTDED-ICSTNFIQQDF 577


>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 23/78 (29%), Positives = 34/78 (43%)
 Frame = +2

Query: 191 DEFQIGAGDTRNLSECFQVFSIAHSLTSTSEALVMATELTLQEFQEDGCCYIELRSTPRD 370
           D F   +  T   S+  Q  S  HSLTS +  L+ ++ L    F +     +EL S   D
Sbjct: 452 DTFVKSSDSTFPSSQSMQSPSKLHSLTSNATDLLSSSSLKKNFFSQQEADEVEL-SNNYD 510

Query: 371 TQYITKKQYIDSIIRAME 424
            Q     QY+   +R +E
Sbjct: 511 LQG-AAVQYLQRRLRMVE 527


>SPAC2E1P5.03 |||DNAJ domain protein Erj5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 303

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -1

Query: 403 INILLLCYVLCVTWSTSQLNI 341
           I ILLL + +C+ W++S L I
Sbjct: 4   IFILLLLFGVCLAWTSSDLEI 24


>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 767

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 107 GSLSQATMLQLQRYYVDAGISD 172
           GS  Q T+ + Q YY DAG ++
Sbjct: 211 GSYQQVTLNETQTYYEDAGSNE 232


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,738,265
Number of Sequences: 5004
Number of extensions: 55597
Number of successful extensions: 130
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)