Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30n19
         (673 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1571 + 27811510-27811613,27812493-27812563,27812798-278128...    86   2e-17
02_01_0071 - 496936-497158,497231-497352,497918-497966,498141-49...    28   7.8  
02_01_0057 + 420812-421556,422473-422597,422622-422912,423357-42...    28   7.8  

>07_03_1571 +
           27811510-27811613,27812493-27812563,27812798-27812889,
           27812963-27813022,27813130-27813351,27813450-27813526,
           27813618-27813687,27813793-27813906,27813985-27814051,
           27814259-27814363,27814470-27814594
          Length = 368

 Score = 86.2 bits (204), Expect = 2e-17
 Identities = 41/128 (32%), Positives = 78/128 (60%), Gaps = 2/128 (1%)
 Frame = +2

Query: 47  MDLNFFCKELPKIELHAHLNGSLSQATMLQLQRYYVDAGISDKTNTFLDEFQIGAGDTRN 226
           M +  +C  LPK+ELHAHLNGS+  +T+L+L +   D G       F D   +   + R+
Sbjct: 7   MSMREWCVALPKVELHAHLNGSVRDSTLLELAKQLGDKG----DIVFEDVKDVIMKNGRS 62

Query: 227 LSECFQVFSIAHSLTSTSEALVMATELTLQEFQEDGCCYIELRSTPRDTQY--ITKKQYI 400
           L ECF++F + H LT+  + +   T+  +++F  +   Y+E+R+TP++ +   +TK+ Y+
Sbjct: 63  LPECFRLFELYHILTTDHDTVTRITKEVVEDFAMENVVYLEIRTTPKNNEAKGMTKRSYM 122

Query: 401 DSIIRAME 424
           +++I+ ++
Sbjct: 123 NAVIKGLK 130



 Score = 58.4 bits (135), Expect = 5e-09
 Identities = 22/41 (53%), Positives = 32/41 (78%)
 Frame = +2

Query: 551 VVGIELSGNPAVGNFGDFIPALNRARQSGLKVTLHCGEVCN 673
           V+GI+LSGNP VG +  ++PAL  A++ G+ +T+HCGEV N
Sbjct: 195 VIGIDLSGNPVVGEWETYLPALEHAKELGIPITIHCGEVAN 235


>02_01_0071 -
           496936-497158,497231-497352,497918-497966,498141-498211,
           498368-498454,498660-498740,498838-498901,498994-499057,
           499246-499444,499916-500134
          Length = 392

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -2

Query: 672 LHTSPQCSVTLSPDCLALFKAGIKSPKFPTAGLPLNSIPTTVSG 541
           L  +   SVTL PD L+       SP FP+  + LN    ++SG
Sbjct: 36  LPVNDSISVTLDPDHLSATTTVAVSPSFPSDRMWLNGKEISLSG 79


>02_01_0057 +
           420812-421556,422473-422597,422622-422912,423357-423555,
           423737-423800,423894-423957,424055-424135,424334-424420,
           424492-424500
          Length = 554

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -2

Query: 672 LHTSPQCSVTLSPDCLALFKAGIKSPKFPTAGLPLNSIPTTVSG 541
           L  +   SVTL PD L+       SP FP+  + LN    ++SG
Sbjct: 350 LPVNDSISVTLDPDHLSATTTVAVSPSFPSDRMWLNGKEISLSG 393


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,370,952
Number of Sequences: 37544
Number of extensions: 308278
Number of successful extensions: 689
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)