Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30n18
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces po...    30   0.28 
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo...    29   0.64 
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    29   0.84 
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    28   1.5  
SPAC2C4.03c |smd2|cwf9|Sm snRNP core protein Smd2|Schizosaccharo...    27   1.9  
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    27   3.4  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    26   4.5  
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    26   5.9  
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    26   5.9  
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch...    25   7.9  
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc...    25   7.9  

>SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 348

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 20/79 (25%), Positives = 36/79 (45%)
 Frame = +3

Query: 123 KFVIPRYMWRGILYLCIPFPFFLTYRPPVFIPQRFNIFRYFLLEVSKRYFCYISVVFVTC 302
           +FVI       +L   +  PFFL       I  RFN ++ +++   +        + +  
Sbjct: 68  RFVINGIHSPRLLSALLKRPFFLLVYIDAPIMLRFNRYKTYVILQCQHVVANFKFIVIIL 127

Query: 303 TSHCTVYSFIAKNTTMSRY 359
            + C+VYS +A NTT+  +
Sbjct: 128 HAMCSVYSSLA-NTTLEEF 145


>SPAC6G10.07 |||nuclear cap-binding complex large subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 780

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = -1

Query: 320 DCAVRGACDEDHTNVTKVPFTDFQQKISENVKTLWYEHWRSI 195
           D ++    +E+   VT +  +  +  ISEN + +W  HW ++
Sbjct: 677 DSSLINEANEEKEIVTNLLLSALRALISENAENIWVSHWLNL 718


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = +3

Query: 300 CTSH-CTVYSFIAKNTTMSRYPFKLDILSSFV*ICQYFFYSINNIVHIKSK 449
           C+ H C +   IA  T  S YP K  + ++FV      F+S    V  K K
Sbjct: 352 CSMHPCDIEEIIAWRTLNSLYPSKATLSNNFVSTSDLSFWSREYFVRSKGK 402


>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = -1

Query: 575 SIFTAECYAIYTALLYINNVNSSDFLILTDSKSSLLAL 462
           S+F+++ Y +   +++++ VNS  F+    SK SL  L
Sbjct: 603 SVFSSKLYKLVIFVVFLSLVNSGPFIFRALSKKSLAVL 640


>SPAC2C4.03c |smd2|cwf9|Sm snRNP core protein
           Smd2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 115

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 263 FTDFQQKISENVKTLWYEHWRSISQEKGKWYTK 165
           F      + ENVK +W E  R+ S +KGK   K
Sbjct: 60  FDRHSNMVLENVKEMWTEKKRTASGKKGKAINK 92


>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = +3

Query: 246 LLEVSKRYFCYI--SVVFVTCTSHCTVYSFI 332
           LLE S  +  Y   S+ F+ C  +C+ Y FI
Sbjct: 418 LLEASATFISYPFQSLAFIVCLKYCSFYFFI 448


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -1

Query: 185  KGKWYTKIQNTPPHVPWYNKFKEANSRQFITTINRLRFGH 66
            K  WY K+Q     +  Y K + A +  F  T+ +LR  H
Sbjct: 1296 KETWYEKLQRWEDALSAYEKREAAGAGNFEITMGKLRCLH 1335


>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +3

Query: 288 VFVTCTSHCTVYSFIAKNTTMSRYPF 365
           +  TCT   TVYS +  N T   YPF
Sbjct: 344 ILPTCTQE-TVYSLLTGNDTACVYPF 368


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 242 ISENVKTLWYEHWRSISQEKGK 177
           I+EN K+ W  H+  +  +KGK
Sbjct: 37  IAENWKSYWKSHYPFVKNDKGK 58


>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 783

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/63 (23%), Positives = 31/63 (49%)
 Frame = +3

Query: 204 PVFIPQRFNIFRYFLLEVSKRYFCYISVVFVTCTSHCTVYSFIAKNTTMSRYPFKLDILS 383
           PV   +  +  + + +++SKRY C   +V   C++  + Y+  +     +R   +  +LS
Sbjct: 69  PVKDEKEMDYSKDYFIDLSKRYKCLEYIVERLCSTKVSTYTTPSLIEVCNRISNQKSLLS 128

Query: 384 SFV 392
           S V
Sbjct: 129 SDV 131


>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
           Bms1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1121

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = -1

Query: 458 SDPFRFNMNYIIYRIKEILANLNERGKNVQFKWVPAHCGIFG 333
           +DP  F+M +  ++   + +  + R +N   K+ P H   FG
Sbjct: 779 NDPLIFSMGWRRFQSIPVYSISDSRTRNRMLKYTPEHMHCFG 820


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,753,518
Number of Sequences: 5004
Number of extensions: 58552
Number of successful extensions: 170
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)