Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30n18
         (692 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0291 + 16951154-16952740                                         29   2.6  
09_05_0013 + 20067115-20067183,20067585-20067691,20067905-200680...    28   8.1  

>12_02_0291 + 16951154-16952740
          Length = 528

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -1

Query: 680 YKLYTDGSKCSGRVASAYYDPQLKKSRCFKLDSH 579
           ++L    SK  G +   YY  +  K RCFKL  H
Sbjct: 120 WRLCPKASKNKGAITVTYYPGEADKPRCFKLVFH 153


>09_05_0013 +
           20067115-20067183,20067585-20067691,20067905-20068037,
           20068163-20068306,20068415-20068573,20068710-20068783,
           20068907-20068982,20069100-20069155,20069346-20069433,
           20069508-20069648,20069737-20069886,20070165-20070398
          Length = 476

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 24/96 (25%), Positives = 40/96 (41%)
 Frame = -1

Query: 665 DGSKCSGRVASAYYDPQLKKSRCFKLDSHCSIFTAECYAIYTALLYINNVNSSDFLILTD 486
           D  K S +VA   YD +++ S         +++TA  YA   ++LY  + +  D  I+  
Sbjct: 299 DLEKASQQVAKPLYDIKVQPSTLLPKQIG-NMYTASLYAALASVLYNKHASLDDQRIVMF 357

Query: 485 SKSSLLALESDPFRFNMNYIIYRIKEILANLNERGK 378
           S  S L       + N     + +  I + LN   K
Sbjct: 358 SYGSGLTSTMFSLKLNNGQDPFSLSNIASVLNATEK 393


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,503,019
Number of Sequences: 37544
Number of extensions: 330101
Number of successful extensions: 746
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)