Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30n18
         (692 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    24   1.2  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   2.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.4  

>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
 Frame = -1

Query: 293 EDHTNVTKVPFTDFQQKISENVKTLWYEHWRSISQEKGKWYTKIQNTPPHVPWYNKFK-- 120
           +DH N   +  +D  QK++  V+      +  +++ K     K+ ++  +    +++K  
Sbjct: 397 DDHQNSPSIFISDDNQKLTGIVQISNMTEYNGLTEPKKDNKRKLSDSTMNKINNHEYKRS 456

Query: 119 ---EANSRQFI--TTIN 84
              E+NS QFI  TT+N
Sbjct: 457 VSRESNSNQFILMTTVN 473


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -3

Query: 396 FKRKRKECPI*MGTCSLWYFWQ*SCRLCSA 307
           F   R+ CP+ +G+C   Y    S  LC A
Sbjct: 169 FPMDRQSCPLILGSCKCIYVQ--SINLCMA 196


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +3

Query: 171  IPFPFFLTYRPPVFIPQRF 227
            +PF  F  + PP F+P  F
Sbjct: 1156 LPFTPFNFWNPPPFMPSPF 1174


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,905
Number of Sequences: 438
Number of extensions: 4162
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)