Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30n17
         (731 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006708-26|AAF60419.1| 1724|Caenorhabditis elegans Holocentric ...    29   2.6  
AC006708-25|AAK68883.1| 1758|Caenorhabditis elegans Holocentric ...    29   2.6  
U00037-4|AAU20840.1|  454|Caenorhabditis elegans Prolyl trna syn...    29   3.4  
U00037-3|AAA50660.1|  581|Caenorhabditis elegans Prolyl trna syn...    29   3.4  
U41034-2|AAA82379.1|  915|Caenorhabditis elegans Hypothetical pr...    28   5.9  

>AC006708-26|AAF60419.1| 1724|Caenorhabditis elegans Holocentric
            chromosome bindingprotein protein 6, isoform a protein.
          Length = 1724

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
 Frame = -1

Query: 485  KTLLKGSRVIISEFLTKSRHDVFLEARSHFGVKR-CWTTDGKIIVLLPDNKRSKIEQMFE 309
            KT++  S + + EFL + R    L+ +    ++  C      I  +L DN++ K E MFE
Sbjct: 1294 KTIVP-SILSLREFLNQHRSP--LQRKCLLAIRMICIEHKNDIDEILQDNRQLKDEMMFE 1350

Query: 308  LQHLKTKFPSAQK 270
            LQ +K +   A +
Sbjct: 1351 LQRVKQRTEEANR 1363


>AC006708-25|AAK68883.1| 1758|Caenorhabditis elegans Holocentric
            chromosome bindingprotein protein 6, isoform b protein.
          Length = 1758

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
 Frame = -1

Query: 485  KTLLKGSRVIISEFLTKSRHDVFLEARSHFGVKR-CWTTDGKIIVLLPDNKRSKIEQMFE 309
            KT++  S + + EFL + R    L+ +    ++  C      I  +L DN++ K E MFE
Sbjct: 1294 KTIVP-SILSLREFLNQHRSP--LQRKCLLAIRMICIEHKNDIDEILQDNRQLKDEMMFE 1350

Query: 308  LQHLKTKFPSAQK 270
            LQ +K +   A +
Sbjct: 1351 LQRVKQRTEEANR 1363


>U00037-4|AAU20840.1|  454|Caenorhabditis elegans Prolyl trna
           synthetase protein1, isoform b protein.
          Length = 454

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = -1

Query: 338 KRSKIEQMFELQHLKTKFPSAQK--AQGAPQSSGKSHDEPKTAPKSAAEREIGKRTT 174
           K+  I+++  L+ L  K  + Q+  A  A QS  K  ++PK  PK   +++ GK+ T
Sbjct: 32  KKEAIDKLLALK-LTYKEVTGQEYAAPNARQSKPKKEEKPKQQPKQQEKKQDGKKQT 87


>U00037-3|AAA50660.1|  581|Caenorhabditis elegans Prolyl trna
           synthetase protein1, isoform a protein.
          Length = 581

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = -1

Query: 338 KRSKIEQMFELQHLKTKFPSAQK--AQGAPQSSGKSHDEPKTAPKSAAEREIGKRTT 174
           K+  I+++  L+ L  K  + Q+  A  A QS  K  ++PK  PK   +++ GK+ T
Sbjct: 32  KKEAIDKLLALK-LTYKEVTGQEYAAPNARQSKPKKEEKPKQQPKQQEKKQDGKKQT 87


>U41034-2|AAA82379.1|  915|Caenorhabditis elegans Hypothetical
           protein M02D8.3 protein.
          Length = 915

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -1

Query: 674 IPESDATDPATAIVGILTNQMKVAGCTEEDLTACYRL 564
           +P  +  D A  +  IL ++   +  TEE+L A YRL
Sbjct: 769 VPREELIDLARELFAILLDEWATSFVTEEELEALYRL 805


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,220,927
Number of Sequences: 27780
Number of extensions: 369462
Number of successful extensions: 968
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 968
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)