Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte30n14
(768 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce... 105 9e-24
SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr 1|... 38 0.002
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc... 30 0.42
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos... 29 0.55
SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme Fub2|Schiz... 28 1.7
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr... 27 2.2
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ... 27 3.9
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 26 5.2
SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces ... 23 5.4
SPBC902.05c |idh2|glu2|isocitrate dehydrogenase |Schizosaccharom... 25 9.0
SPAC1687.07 |||conserved fungal protein|Schizosaccharomyces pomb... 25 9.0
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 25 9.0
>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 520
Score = 105 bits (251), Expect = 9e-24
Identities = 76/207 (36%), Positives = 107/207 (51%), Gaps = 21/207 (10%)
Frame = +2
Query: 170 GTLEG--VVCDNGKYVA--FKGIPYAKPPLGKLRFKAPEPPEP-WDGIRNANEHGPICPQ 334
G L G V+ +NGK F GI YAKPP+GKLR++ P E +D + N+ ICPQ
Sbjct: 2 GVLHGLTVLDENGKEKCHRFTGIRYAKPPVGKLRWRRPVTLEDGYDYSGDYNQFKTICPQ 61
Query: 335 --YNERMNRIEDGS----EDCLYLNVY-SKNLKPTTPLPVMVWIHGGGFYTGSG-NSEFY 490
YN R N++ + EDCL+LN++ KP PV+ +IHGG G+ +
Sbjct: 62 PFYNNRKNQVRNPDFKYDEDCLFLNIWVPAGEKPAEGWPVLYFIHGGWLQVGNPLHYRQC 121
Query: 491 GPDFFMEH----EVILVTLNYRLEVLGFLC----LDNEEVPGNAGLKDQVAALKWIKQNI 646
P + ILV+ +RL + GFL L+ + N G DQ L+W ++I
Sbjct: 122 DPQDLQADGSPAKFILVSPGHRLNLFGFLAGKELLEEDPKSSNFGFWDQRLGLEWTYKHI 181
Query: 647 AAFGGDKNNITLFGCSAGSASTSLHLV 727
+FGG+K NI + G SAGS S L+
Sbjct: 182 ESFGGNKENIAVGGISAGSYSALFQLI 208
>SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 37.9 bits (84), Expect = 0.002
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Frame = +2
Query: 428 PVMVWIHGGGFYTGSGNSE-FYGPDFFMEHEVILVTLNYRLEVLGFLCLDNEEVPGNAGL 604
P +W HGGG+ G+ N+E + + + ++V ++YRL E P A +
Sbjct: 101 PCFLWFHGGGWVLGNINTENSFATHMCEQAKCVVVNVDYRLA---------PEDPFPACI 151
Query: 605 KDQVAALKWIKQNIAAFGGDKNNITLFGCSAG 700
D AL + +N G + N I + G SAG
Sbjct: 152 DDGWEALLYCYENADTLGINPNKIAVGGSSAG 183
>SPBC428.07 |meu6||meiotic chromosome segregation protein
Meu6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 651
Score = 29.9 bits (64), Expect = 0.42
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +2
Query: 338 NERMNRIEDGSEDCLYLNVYSKNLKPTTPLPVMVWIHGGGFYTGSGN 478
N+ +NRI ++DC L YSK+ + P ++ G+GN
Sbjct: 181 NDHLNRIAKATQDCRGLLFYSKSQSTSVPSGIINLTDAVSIEPGTGN 227
>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 591
Score = 29.5 bits (63), Expect = 0.55
Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
Frame = +2
Query: 251 KLRFKAPEPPEPWDGIRNANEHGPICPQYNERMNRIEDG----SEDCLYLNVYSKNLKP- 415
+ RF P +PW GIR N + PQY E G S + Y +N KP
Sbjct: 385 QFRFMTRGPSDPWYGIRRPNYNSQ--PQYQRGSYNREGGNMDRSRNVNYQPKRQQNFKPL 442
Query: 416 TTPLP 430
T+ LP
Sbjct: 443 TSDLP 447
>SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme
Fub2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 628
Score = 27.9 bits (59), Expect = 1.7
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = -1
Query: 240 GLAYGIPLNATYFPLSQTTPSSVPCST*VKDILLTTEIINNIYMF 106
GL Y I NAT PL Q PS+ P +D + T+ IN + F
Sbjct: 537 GLPYQILSNATSIPLKQQPPSNSP-----EDSQVLTDEINEVNDF 576
>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1225
Score = 27.5 bits (58), Expect = 2.2
Identities = 18/62 (29%), Positives = 27/62 (43%)
Frame = +3
Query: 438 FGYMVEVSIRDRETLNFMGQIFSWNMR*YS*HLTTD*KF*GSCV*TMKKFQETLGSKIKW 617
F EV + ++T NF+ +F W+ HL GSCV K Q+ + +
Sbjct: 1085 FNESFEVELPCKQTCNFVANVFDWDFGNKDDHL-------GSCVIDCKLLQQQQQTNYEI 1137
Query: 618 PL 623
PL
Sbjct: 1138 PL 1139
>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 26.6 bits (56), Expect = 3.9
Identities = 17/38 (44%), Positives = 21/38 (55%)
Frame = +2
Query: 287 WDGIRNANEHGPICPQYNERMNRIEDGSEDCLYLNVYS 400
W I N N I Y+ER++ IED +E LYL YS
Sbjct: 10 WYCIDNQNYDNSIF--YSERLHAIEDSNES-LYLLAYS 44
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex subunit
Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 26.2 bits (55), Expect = 5.2
Identities = 24/98 (24%), Positives = 40/98 (40%)
Frame = +2
Query: 323 ICPQYNERMNRIEDGSEDCLYLNVYSKNLKPTTPLPVMVWIHGGGFYTGSGNSEFYGPDF 502
I + R+ ++ S+ L Y + KP+ V W HG F ++ Y
Sbjct: 1009 ILQEMARRIAKVSKESKQELNEEEYVNSFKPSLMEVVYAWAHGASFAQICKMTDVY---- 1064
Query: 503 FMEHEVILVTLNYRLEVLGFLCLDNEEVPGNAGLKDQV 616
E L+ + RLE L +D +V GN L+ ++
Sbjct: 1065 ----EGSLIRMFRRLEELIRQMVDAAKVIGNTSLQQKM 1098
>SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 324
Score = 22.6 bits (46), Expect(2) = 5.4
Identities = 10/34 (29%), Positives = 16/34 (47%)
Frame = +2
Query: 392 VYSKNLKPTTPLPVMVWIHGGGFYTGSGNSEFYG 493
+ + L T +P +++H GF GN F G
Sbjct: 279 IRDEKLSELTGIPGCIFVHASGFI--GGNQTFEG 310
Score = 21.8 bits (44), Expect(2) = 5.4
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = +2
Query: 278 PEPWDGIRN 304
PEPW GIR+
Sbjct: 273 PEPWRGIRD 281
>SPBC902.05c |idh2|glu2|isocitrate dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 25.4 bits (53), Expect = 9.0
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Frame = +2
Query: 143 KMSLTHVEQGTLEGVVCDNGKY----VAFKGI-PYAKPPLGKLRFKAPEPPEPWDGIR 301
+ S T GT EGV NG Y +A GI P + ++ FKA + P W+ ++
Sbjct: 25 RFSSTKAAAGTYEGVKNANGNYTVTMIAGDGIGPEIAQSVERI-FKAAKVPIEWERVK 81
>SPAC1687.07 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 124
Score = 25.4 bits (53), Expect = 9.0
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -3
Query: 235 SIRYSFKRHVFSIITNNTLQCSLFDVSQ 152
SIRYS + F NN L S FD++Q
Sbjct: 35 SIRYSPVENSFEADFNNGLNSSSFDIAQ 62
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 25.4 bits (53), Expect = 9.0
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = -1
Query: 192 QTTPSSVPCST*VKDILLTTEIINNIYMFLIYRFAFQTVYWILI 61
+TTP+ + D+ E+I+ ++MF +R FQ V+ + +
Sbjct: 994 ETTPTGRILNRFSSDVYRVDEVISRVFMF-FFRNLFQIVFVLAV 1036
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,348,189
Number of Sequences: 5004
Number of extensions: 72251
Number of successful extensions: 184
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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