Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30n13
         (761 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom...    30   0.31 
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce...    29   0.72 
SPAC23A1.16c |||DUF408 family protein|Schizosaccharomyces pombe|...    29   0.96 
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr...    28   1.7  
SPBC16G5.01 |rpn12|mts3, SPBC342.07|19S proteasome regulatory su...    27   2.9  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    27   2.9  
SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ...    27   2.9  
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr...    27   3.9  
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc...    27   3.9  
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe...    26   5.1  
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces...    26   5.1  
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom...    26   5.1  
SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc...    26   6.7  
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c...    26   6.7  
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran...    26   6.7  
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz...    25   8.9  

>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score = 30.3 bits (65), Expect = 0.31
 Identities = 14/59 (23%), Positives = 30/59 (50%)
 Frame = +2

Query: 8   KITMSAKSTTPRKRNQRITTRLSQENINKCNKSVERQRARTFVTWYKQMIDNERQNLAL 184
           ++ +  +    R R +R+   ++++   K N+    +RA TF+  Y+Q    ER+ + L
Sbjct: 16  EVLLKKRKVNERTRKERVEQAIAKKEAQKKNRKETFKRAETFINNYRQ---RERERIRL 71


>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1004

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +2

Query: 518 EIVEQEQNSLKRQYPEDENNIDISQNGDGMGQKPKRKCIPV-TPPNPELGQ 667
           E++E    S K  Y EDE +  I +N   +  K KR+   V +  N EL Q
Sbjct: 40  ELLENNVGSSKNSYQEDEGSSSIDENAPLISIKRKRRIRTVKSTSNKELVQ 90


>SPAC23A1.16c |||DUF408 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 197

 Score = 28.7 bits (61), Expect = 0.96
 Identities = 19/85 (22%), Positives = 37/85 (43%)
 Frame = +2

Query: 71  LSQENINKCNKSVERQRARTFVTWYKQMIDNERQNLALYLADDAFLEWFGRTIKTRKKVS 250
           +++++I K  K+ +  + +  +TW K +ID  R  L     D   LEW  + +     + 
Sbjct: 1   MNKKSILKKPKNAQSTQEKQLITWSKSLIDEARSRLQY---DFFALEWIEKLVDP-VSLE 56

Query: 251 AFLKHDMHCSKHDFTSVESIEKIQN 325
              +   +  K D+  V    K+ N
Sbjct: 57  TLEEARKYLRKSDYDQVVKERKLVN 81


>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 501

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +2

Query: 539 NSLKRQYPEDENNIDISQNGDGMGQKPKRKCIPVTPPNP 655
           +S + Q+ ED  N D+S   + +GQ       P +PP P
Sbjct: 304 SSNRTQHTEDNYNKDVSDAQNSLGQSAVDLTTPSSPPIP 342


>SPBC16G5.01 |rpn12|mts3, SPBC342.07|19S proteasome regulatory
           subunit Rpn12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 270

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +1

Query: 307 YRKNTK*T*KITQERRWNFSESST-FPRDKN 396
           Y +NTK T K+ +ER W+  +    FP++ N
Sbjct: 196 YLENTKETEKLAEERGWDIRDGVIYFPKEAN 226


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +2

Query: 194 DDAFLEWFGRTIKTRKKVSAFLKHDMH-CSKH 286
           DDAF+E+   T+  RK    FL H++   SKH
Sbjct: 691 DDAFVEYKDATVANRKDFIEFLFHNITVSSKH 722


>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 581

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -2

Query: 658 FWIWWCYWNTFSFWLLSHSITILTYINVIF 569
           FW+W   +  F+ WL+     IL    +IF
Sbjct: 531 FWLWAKEYELFNSWLMPSVFMILVLPEIIF 560



 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -2

Query: 637 WNTFSFWLLSHSITILTY 584
           W  FSFWL S   TI  Y
Sbjct: 402 WRPFSFWLFSIFCTIAAY 419


>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
 Frame = +2

Query: 518 EIVEQEQNSLKRQYP---EDENNIDISQNGDGMGQKPKRKCIPVTPPNPELGQGDCLPS 685
           EI+EQ Q+ +  +     EDEN ID  +      +K +      T   P+L  G  LP+
Sbjct: 135 EIIEQAQHDVSLRNLSGIEDENIIDDGETAINEQKKREANVFSDTQSAPQLKSGKALPA 193


>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 19/69 (27%), Positives = 32/69 (46%)
 Frame = +2

Query: 86  INKCNKSVERQRARTFVTWYKQMIDNERQNLALYLADDAFLEWFGRTIKTRKKVSAFLKH 265
           I K +++  R  + T  TW  Q   +  Q ++   A+ A   W  RT+ T + + A    
Sbjct: 277 IRKAHENSGRDCSITSATWLPQ---STSQVISSCSANSALKLWDLRTVHTVRPLPAATTP 333

Query: 266 DMHCSKHDF 292
           ++  SK DF
Sbjct: 334 ELTTSKRDF 342


>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 871

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +2

Query: 518 EIVEQEQNSLKRQYPEDENNIDISQNGDGMGQKPKR 625
           ++ +  + SL  +YP+    I +SQ+ D     PK+
Sbjct: 309 QLKDSYEQSLYEEYPQFAEPISVSQSSDSSSSIPKK 344


>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 580

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -2

Query: 658 FWIWWCYWNTFSFWLLSHSITILTYINVIFIF 563
           FW+ W  + T+  W++     +LT   ++ IF
Sbjct: 465 FWLAWSGYYTYVHWIVPTLSGLLTGAGILLIF 496


>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 649

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = +2

Query: 2   NRKITMSAKSTTPRKRNQRITTRLSQENINKCNKSVERQRART 130
           NRK T+  K + P+K+N+  +T   +  + +   S E +  ++
Sbjct: 296 NRKPTLRKKKSIPKKQNESSSTIQKENTVQQEASSSEEEAVKS 338


>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 849

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = +2

Query: 80  ENINKCNKSVERQRARTFVTWYKQMIDNERQNLALYLADDAFLE 211
           E IN C    E++R R F + +KQ      Q     L + A  E
Sbjct: 505 ETINYCLNMTEKERERRFSSLWKQATSQSSQQWIYKLINRAAYE 548


>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 625

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 18/74 (24%), Positives = 32/74 (43%)
 Frame = +2

Query: 533 EQNSLKRQYPEDENNIDISQNGDGMGQKPKRKCIPVTPPNPELGQGDCLPSTSGTDSDKS 712
           EQ +   +Y +D+++ D+  N              +TP      +   LPST+ +   K 
Sbjct: 237 EQTAAFEEYDDDDDD-DVDDNEQSNSMIETSANADITP------KASLLPSTTESSISKD 289

Query: 713 HDTLNAQLQKLAVE 754
           H+T  A L   +V+
Sbjct: 290 HETSQAPLGSESVD 303


>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 516

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 527 EQEQNSLKRQYPEDENNID 583
           E+E+   KRQ  E+ENN+D
Sbjct: 440 EREKEKRKRQEEEEENNLD 458


>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
           Utp5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 666

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +2

Query: 518 EIVEQEQNSLKRQYPEDEN-NIDISQNGDG 604
           E+   E+NS K  +P++EN N ++S++  G
Sbjct: 627 EMYSDEENSSKGAFPDEENENRELSEDYSG 656


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,901,360
Number of Sequences: 5004
Number of extensions: 57892
Number of successful extensions: 225
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)