Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte30n13
(761 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0204 - 15150854-15151147,15152230-15153689,15154055-151542... 30 2.3
05_07_0345 - 29417029-29417769 29 3.1
02_05_0560 - 29956943-29956978,29957134-29957244,29957343-299574... 29 4.0
01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,117... 29 4.0
09_01_0014 + 357398-357583,360213-360323,360520-360676,361067-36... 29 5.3
03_05_0406 + 23895593-23896141 29 5.3
09_06_0348 + 22452219-22452360,22452791-22452912,22453342-224534... 28 9.3
04_04_0168 + 23259459-23260001,23260883-23262780,23263000-232631... 28 9.3
04_01_0329 - 4362493-4362602,4364582-4364651,4364885-4365182,436... 28 9.3
>07_03_0204 -
15150854-15151147,15152230-15153689,15154055-15154266,
15155123-15155275,15155569-15155630,15155733-15155785,
15156380-15156452,15156499-15156619,15156699-15156878,
15157333-15157391
Length = 888
Score = 29.9 bits (64), Expect = 2.3
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 10/87 (11%)
Frame = +2
Query: 524 VEQEQNSLKRQYP-EDENNIDISQNGDGMGQKPKRKCIPVTPPNPELGQGDCL------P 682
++ E N + R ED N+ D+S + DG +KP+++ I T + + D + P
Sbjct: 704 MDYESNMMVRAVKVEDSNDEDVSHSNDGDVKKPEKEKIRGTKDGSDKRKKDAILRRLSAP 763
Query: 683 STSGTDSDKSHDTL---NAQLQKLAVE 754
T D+ K + A LQKL E
Sbjct: 764 KTPLNDAQKRAQNMRAYKADLQKLKKE 790
>05_07_0345 - 29417029-29417769
Length = 246
Score = 29.5 bits (63), Expect = 3.1
Identities = 18/68 (26%), Positives = 30/68 (44%)
Frame = +2
Query: 527 EQEQNSLKRQYPEDENNIDISQNGDGMGQKPKRKCIPVTPPNPELGQGDCLPSTSGTDSD 706
+Q QN ++ Y +D NN + G+G G + + P +G G GT
Sbjct: 52 DQNQNQNQKPYYDDSNNNNNYDEGEGEGGDDQEEGPEAAAP---VGPGQSFTGGRGTYKY 108
Query: 707 KSHDTLNA 730
+H+ L+A
Sbjct: 109 MAHEFLDA 116
>02_05_0560 -
29956943-29956978,29957134-29957244,29957343-29957477,
29958370-29958537,29959131-29959238
Length = 185
Score = 29.1 bits (62), Expect = 4.0
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +2
Query: 569 ENNIDISQNGDGMGQKP-KRKCIPVTPPNPELGQG-DCLPSTSGTDSDKSHDTLNAQLQK 742
E++ D+ D MG++ +R + E GQ D +P TS D+ K D +K
Sbjct: 2 EDDYDMDDTADDMGEENYERGMRDSDSEDEEHGQSNDKIPDTSSVDARKGKDIQGIPWEK 61
Query: 743 LAV 751
LA+
Sbjct: 62 LAI 64
>01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,
1171148-1171398,1171442-1171687,1172220-1172415,
1172796-1172876,1172966-1173169,1173671-1173880,
1173953-1174174,1174437-1174480,1174974-1175052,
1175066-1175227,1175337-1175564,1175786-1175815,
1175905-1176273,1176356-1176571,1177202-1177683,
1177930-1177975
Length = 1352
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +2
Query: 221 RTIKTRKKVSAFLKHDMHCSKHDFTSVESIEKIQNRHEKLHRRDD 355
R+ K S +H H S D + ES E+ ++RH+K HR D
Sbjct: 1226 RSSKKDHSSSRSHRHHHHRSSGDDSGSESEERGRSRHKKHHRSSD 1270
>09_01_0014 +
357398-357583,360213-360323,360520-360676,361067-361233,
362012-362122,362206-362349,362436-362476,364134-364174,
364175-364261,365402-365724
Length = 455
Score = 28.7 bits (61), Expect = 5.3
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +2
Query: 137 TWYKQMIDNERQNLALYLADDAFLEWFGRTIKTR--KKVSAFLKHD 268
TW+ I++ Q+L LAD+ F W G TR K S F HD
Sbjct: 103 TWF---INSAEQSLGYILADNGFDVWIGNVRGTRWSKGHSTFSVHD 145
>03_05_0406 + 23895593-23896141
Length = 182
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = +2
Query: 590 QNGDGMGQKPKRKCIPVTPPNPELGQGDCLPSTSGTDSDKSHD 718
Q G+ QK K P T P P +GD P T G DK +
Sbjct: 52 QTRSGVIQKYKLMMSPNTDPEPSTSKGD-KPKTDGPKDDKPEE 93
>09_06_0348 +
22452219-22452360,22452791-22452912,22453342-22453436,
22453691-22453844,22453952-22454014,22454329-22454478,
22454650-22454982,22455086-22455820
Length = 597
Score = 27.9 bits (59), Expect = 9.3
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +2
Query: 299 VESIEKIQNRHEKLHRRDDGTLVSPLHSPEIKTGKPGKKKLSFNCSPE 442
+E I+K+Q + ++L DD +++SP + K +K+LS PE
Sbjct: 242 MEEIDKLQRKLKELQEEDDRSILSPRQKAAAASLKK-EKRLSTGRYPE 288
>04_04_0168 +
23259459-23260001,23260883-23262780,23263000-23263150,
23263851-23264669
Length = 1136
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +2
Query: 518 EIVEQEQNSLKRQYPEDENNIDISQNGDGMGQKPKRKC--IPVTP 646
+ ++QE S+KR + N+ +S G+G G++ KC + +TP
Sbjct: 344 QFIQQEAYSMKRSH-----NVLLSNEGEGEGERKLMKCYRVNITP 383
>04_01_0329 -
4362493-4362602,4364582-4364651,4364885-4365182,
4365525-4365748
Length = 233
Score = 27.9 bits (59), Expect = 9.3
Identities = 20/77 (25%), Positives = 30/77 (38%)
Frame = +2
Query: 161 NERQNLALYLADDAFLEWFGRTIKTRKKVSAFLKHDMHCSKHDFTSVESIEKIQNRHEKL 340
NE+++L A D E +G T+ A KH+ +S S E I + HE
Sbjct: 64 NEKESLGAAWARDDLYEDYGNTLNYSSNTKAHPKHEPFEEVMYVSSFVSSEPIDHLHET- 122
Query: 341 HRRDDGTLVSPLHSPEI 391
R + P P +
Sbjct: 123 -ERPSSPSIKPKPYPSV 138
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,820,037
Number of Sequences: 37544
Number of extensions: 347896
Number of successful extensions: 1052
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1052
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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